Shen, Jian-Ren - OU Author List - OKAYAMA UNIVERSITY SCIENTIFIC ACHIEVEMENT REPOSITORY

Structural insights into a citrate transporter that mediates aluminum tolerance in barley

FullText URL	fulltext.pdf suppl1.pdf suppl2.xlsx
Author	Nguyen Thao, Tran\| Mitani-Ueno, Namiki\| Urano, Ryo\| Saitoh, Yasunori\| Wang, Peitong\| Yamaji, Naoki\| Shen, Jian-Ren\| Shinoda, Wataru\| Ma, Jian Feng\| Suga, Michihiro\|
Keywords	barley aluminum resistance membrane protein structure citrate transporter MATE transporter
Published Date	2025-08-05
Publication Title	Proceedings of the National Academy of Sciences
Volume	volume122
Issue	issue32
Publisher	Proceedings of the National Academy of Sciences
Start Page	e2501933122
ISSN	0027-8424
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2025 the Author(s).
File Version	publisher
PubMed ID	40763023
DOI	10.1073/pnas.2501933122
Related Url	isVersionOf https://doi.org/10.1073/pnas.2501933122

Collective motions in the primary coordination sphere: a critical functional framework for catalytic activity of the oxygen-evolving complex of photosystem II

FullText URL	fulltext.pdf suppl.pdf
Author	Isobe, Hiroshi\| Suzuki, Takayoshi\| Suga, Michihiro\| Shen, Jian-Ren\| Yamaguchi, Kizashi\|
Published Date	2025
Publication Title	Chemical Science
Volume	volume16
Issue	issue26
Publisher	Royal Society of Chemistry (RSC)
Start Page	12024
ISSN	2041-6520
NCID	AA12555653
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2025 The Author(s).
File Version	publisher
PubMed ID	40469758
DOI	10.1039/d5sc02386f
Web of Science KeyUT	001500731800001
Related Url	isVersionOf https://doi.org/10.1039/d5sc02386f

Cryo-EM Analysis of a Tri-Heme Cytochrome-Associated RC-LH1 Complex from the Marine Photoheterotrophic Bacterium Dinoroseobacter Shibae

FullText URL	fulltext.pdf suppl.docx
Author	Wang, Weiwei\| Liu, Yanting\| Gu, Jiayi\| An, Shaoya\| Ma, Cheng\| Gao, Haichun\| Jiao, Nianzhi\| Shen, Jian‐Ren\| Beatty, John Thomas\| Koblížek, Michal\| Zhang, Xing\| Zheng, Qiang\| Chen, Jing‐Hua\|
Keywords	energy transfer photoheterotrophic bacteria photosynthesis reaction center structure
Published Date	2025-03-20
Publication Title	Advanced Science
Volume	volume12
Issue	issue18
Publisher	Wiley
Start Page	2413456
ISSN	2198-3844
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	©2025 The Author(s).
File Version	publisher
PubMed ID	40112203
DOI	10.1002/advs.202413456
Web of Science KeyUT	001448217300001
Related Url	isVersionOf https://doi.org/10.1002/advs.202413456

Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex

FullText URL	fulltext.pdf
Author	Kato, Koji\| Nakajima, Yoshiki\| Xing, Jian\| Kumazawa, Minoru\| Ogawa, Haruya\| Shen, Jian-Ren\| Ifuku, Kentaro\| Nagao, Ryo\|
Published Date	2024-10-31
Publication Title	eLife
Volume	volume13
Publisher	eLife Sciences Publications, Ltd
Start Page	RP99858
ISSN	2050-084X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2024, Kato, Nakajima, Xing et al.
File Version	publisher
DOI	10.7554/elife.99858.3
Related Url	isVersionOf https://doi.org/10.7554/elife.99858.3

Structure of a photosystem I supercomplex from Galdieria sulphuraria close to an ancestral red alga

FullText URL	fulltext.pdf
Author	Kato, Koji\| Kumazawa, Minoru\| Nakajima, Yoshiki\| Suzuki, Takehiro\| Dohmae, Naoshi\| Shen, Jian-Ren\| Ifuku, Kentaro\| Nagao, Ryo\|
Published Date	2025-05-16
Publication Title	Science Advances
Volume	volume11
Issue	issue20
Publisher	American Association for the Advancement of Science
Start Page	eadv7488
ISSN	2375-2548
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2025 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science.
File Version	publisher
PubMed ID	40378202
DOI	10.1126/sciadv.adv7488
Web of Science KeyUT	001489655000004
Related Url	isVersionOf https://doi.org/10.1126/sciadv.adv7488

Structure of a photosystem II-FCPII supercomplex from a haptophyte reveals a distinct antenna organization

FullText URL	fulltext.pdf
Author	La Rocca, Romain\| Kato, Koji\| Tsai, Pi-Cheng\| Nakajima, Yoshiki\| Akita, Fusamichi\| Shen, Jian-Ren\|
Published Date	2025-05-05
Publication Title	Nature Communications
Volume	volume16
Issue	issue1
Publisher	Nature Portfolio
Start Page	4175
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2025
File Version	publisher
PubMed ID	40325014
DOI	10.1038/s41467-025-59512-9
Web of Science KeyUT	001482932500018
Related Url	isVersionOf https://doi.org/10.1038/s41467-025-59512-9

Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex

FullText URL	fulltext.pdf
Author	Kato, Koji\| Nakajima, Yoshiki\| Xing, Jian\| Kumazawa, Minoru\| Ogawa, Haruya\| Shen, Jian-Ren\| Ifuku, Kentaro\| Nagao, Ryo\|
Published Date	2024-10-31
Publication Title	eLife
Volume	volume13
Publisher	eLife Sciences Publications
Start Page	RP99858
ISSN	2050-084X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© Kato, Nakajima, Xing et al.
File Version	publisher
PubMed ID	39480899
DOI	10.7554/eLife.99858
Web of Science KeyUT	001394525300001
Related Url	isVersionOf https://doi.org/10.7554/eLife.99858

Conformational Flexibility of D1-Glu189: A Crucial Determinant in Substrate Water Selection, Positioning, and Stabilization within the Oxygen-Evolving Complex of Photosystem II

FullText URL	fulltext.pdf
Author	Isobe, Hiroshi\| Suzuki, Takayoshi\| Suga, Michihiro\| Shen, Jian-Ren\| Yamaguchi, Kizashi\|
Published Date	2024-12-05
Publication Title	ACS Omega
Volume	volume9
Issue	issue50
Publisher	American Chemical Society
Start Page	50041
End Page	50048
ISSN	2470-1343
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2024 The Authors.
File Version	publisher
DOI	10.1021/acsomega.4c09981
Web of Science KeyUT	001370921200001
Related Url	isVersionOf https://doi.org/10.1021/acsomega.4c09981

Structure of a diatom photosystem II supercomplex containing a member of Lhcx family and dimeric FCPII

FullText URL	fulltext.pdf
Author	Feng, Yue\| Li, Zhenhua\| Li, Xiaoyi\| Shen, Lili\| Liu, Xueyang\| Zhou, Cuicui\| Zhang, Jinyang\| Sang, Min\| Han, Guangye\| Yang, Wenqiang\| Kuang, Tingyun\| Wang, Wenda\| Shen, Jian-Ren\|
Published Date	2023-10-25
Publication Title	Science Advances
Volume	volume9
Issue	issue43
Publisher	American Association for the Advancement of Science
Start Page	eadi8446
ISSN	2375-2548
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Authors
File Version	publisher
PubMed ID	37878698
DOI	10.1126/sciadv.adi8446
Web of Science KeyUT	001261640600010
Related Url	isVersionOf https://doi.org/10.1126/sciadv.adi8446

Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea

FullText URL	fulltext.pdf
Author	Mao, Zhiyuan\| Li, Xingyue\| Li, Zhenhua\| Shen, Liangliang\| Li, Xiaoyi\| Yang, Yanyan\| Wang, Wenda\| Kuang, Tingyun\| Shen, Jian-Ren\| Han, Guangye\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-024-48878-x\|
Published Date	2024-05-28
Publication Title	Nature Communications
Volume	volume15
Issue	issue1
Publisher	Nature Portfolio
Start Page	4535
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2024
File Version	publisher
PubMed ID	38806516
DOI	10.1038/s41467-024-48878-x
Web of Science KeyUT	001234660500031
Related Url	isVersionOf https://doi.org/10.1038/s41467-024-48878-x

Oxygen-evolving photosystem II structures during S1–S2–S3 transitions

FullText URL	fulltext.pdf
Author	Li, Hongjie\| Nakajima, Yoshiki\| Nango, Eriko\| Owada, Shigeki\| Yamada, Daichi\| Hashimoto, Kana\| Luo, Fangjia\| Tanaka, Rie\| Akita, Fusamichi\| Kato, Koji\| Kang, Jungmin\| Saitoh, Yasunori\| Kishi, Shunpei\| Yu, Huaxin\| Matsubara, Naoki\| Fujii, Hajime\| Sugahara, Michihiro\| Suzuki, Mamoru\| Masuda, Tetsuya\| Kimura, Tetsunari\| Thao, Tran Nguyen\| Yonekura, Shinichiro\| Yu, Long-Jiang\| Tosha, Takehiko\| Tono, Kensuke\| Joti, Yasumasa\| Hatsui, Takaki\| Yabashi, Makina\| Kubo, Minoru\| Iwata, So\| Isobe, Hiroshi\| Yamaguchi, Kizashi\| Suga, Michihiro\| Shen, Jian-Ren\|
Note	The version of record of this article, first published in Nature, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41586-023-06987-5\|
Published Date	2024-01-31
Publication Title	Nature
Volume	volume626
Issue	issue7999
Publisher	Springer Science and Business Media LLC
Start Page	670
End Page	677
ISSN	0028-0836
NCID	AA00752384
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2024
File Version	publisher
PubMed ID	38297122
DOI	10.1038/s41586-023-06987-5
Web of Science KeyUT	001179152900004
Related Url	isVersionOf https://doi.org/10.1038/s41586-023-06987-5

Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana

FullText URL	fulltext.pdf
Author	Zhao, Songhao\| Shen, Lili\| Li, Xiaoyi\| Tao, Qiushuang\| Li, Zhenhua\| Xu, Caizhe\| Zhou, Cuicui\| Yang, Yanyan\| Sang, Min\| Han, Guangye\| Yu, Long-Jiang\| Kuang, Tingyun\| Shen, Jian-Ren\| Wang, Wenda\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-023-44055-8\|
Published Date	2023-12-09
Publication Title	Nature Communications
Volume	volume14
Issue	issue1
Publisher	Nature Portfolio
Start Page	8164
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2023
File Version	publisher
PubMed ID	38071196
DOI	10.1038/s41467-023-44055-8
Web of Science KeyUT	001118826100025
Related Url	isVersionOf https://doi.org/10.1038/s41467-023-44055-8

Structural insights into the action mechanisms of artificial electron acceptors in photosystem II

FullText URL	fulltext.pdf
Author	Kamada, Shinji\| Nakajima, Yoshiki\| Shen, Jian-Ren\|
Keywords	Photosystem II photosynthesis electron transfer structural biology crystal structure electron acceptor
Published Date	2023-07
Publication Title	Journal of Biological Chemistry
Volume	volume299
Issue	issue7
Publisher	Elsevier
Start Page	104839
ISSN	1083-351X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Authors.
File Version	publisher
PubMed ID	37209822
DOI	10.1016/j.jbc.2023.104839
Web of Science KeyUT	001166336800001
Related Url	isVersionOf https://doi.org/10.1016/j.jbc.2023.104839

Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120

FullText URL	fulltext.pdf
Author	Nagao, Ryo\| Kato, Koji\| Hamaguchi, Tasuku\| Ueno, Yoshifumi\| Tsuboshita, Naoki\| Shimizu, Shota\| Furutani, Miyu\| Ehira, Shigeki\| Nakajima, Yoshiki\| Kawakami, Keisuke\| Suzuki, Takehiro\| Dohmae, Naoshi\| Akimoto, Seiji\| Yonekura, Koji\| Shen, Jian-Ren\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-023-36504-1\|
Published Date	2023-02-17
Publication Title	Nature Communications
Volume	volume14
Issue	issue1
Publisher	Nature Portfolio
Start Page	920
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2023
File Version	publisher
PubMed ID	36805598
DOI	10.1038/s41467-023-36504-1
Web of Science KeyUT	001002516000009
Related Url	isVersionOf https://doi.org/10.1038/s41467-023-36504-1

Geometric, electronic and spin structures of the CaMn4O5 catalyst for water oxidation in oxygen-evolving photosystem II. Interplay between experiments and theoretical computations

FullText URL	fulltext20221122-4.pdf
Author	Yamaguchi, Kizashi\| Shoji, Mitsuo\| Isobe, Hiroshi\| Kawakami, Takashi\| Miyagawa, Koichi\| Suga, Michihiro\| Akita, Fusamichi\| Shen, Jian-Ren\|
Keywords	Water oxidation Oxygen evolution Photosystem II HR XRD SFX XFEL QM/MM calculation DLPNO CCSD(T-0) computations, Oxyl radical character
Note	(C) 2022 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 License. http://creativecommons.org/licenses/by-nc-nd/4.0/. This is the accepted manuscript version. The formal published version is available at https://doi.org/10.1016/j.ccr.2022.214742\| This full-text file will be available in Aug. 2024.\|
Published Date	2022-11
Publication Title	Coordination Chemistry Reviews
Volume	volume471
Publisher	Elsevier BV
Start Page	214742
ISSN	0010-8545
NCID	AA00619249
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2022 Elsevier B.V.
File Version	author
DOI	10.1016/j.ccr.2022.214742
Web of Science KeyUT	000879286600003
Related Url	isVersionOf https://doi.org/10.1016/j.ccr.2022.214742

Roles of the Flexible Primary Coordination Sphere of the Mn4CaOx Cluster: What Are the Immediate Decay Products of the S-3 State?

FullText URL	fulltext20221114-1.pdf
Author	Isobe, Hiroshi\| Shoji, Mitsuo\| Suzuki, Takayoshi\| Shen, Jian-Ren\| Yamaguchi, Kizashi\|
Note	This document is the Accepted Manuscript version of a Published Work that appeared in final form in The Journal of Physical Chemistry B, copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see https://doi.org/10.1021/acs.jpcb.2c02596\| This full-text will be available in Sep. 2023.\|
Published Date	2022-09-15
Publication Title	The Journal of Physical Chemistry B
Volume	volume126
Issue	issue38
Publisher	American Chemical Society (ACS)
Start Page	7212
End Page	7228
ISSN	1520-6106
NCID	AA11114073
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2022 American Chemical Society
File Version	author
PubMed ID	36107406
DOI	10.1021/acs.jpcb.2c02596
Web of Science KeyUT	000863255500001
Related Url	isVersionOf https://doi.org/10.1021/acs.jpcb.2c02596

Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus

FullText URL	fulltext.pdf
Author	Kato, Koji\| Hamaguchi, Tasuku\| Nagao, Ryo\| Kawakami, Keisuke\| Ueno, Yoshifumi\| Suzuki, Takehiro\| Uchida, Hiroko\| Murakami, Akio\| Nakajima, Yoshiki\| Yokono, Makio\| Akimoto, Seiji\| Dohmae, Naoshi\| Yonekura, Koji\| Shen, Jian-Ren\|
Keywords	photosystem I cryo-EM low-energy Chl Gloeobacter Other
Published Date	2022-04-11
Publication Title	Elife
Volume	volume11
Publisher	eLIFE SCIENCES PUBL LTD
Start Page	e73990
ISSN	2050-084X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© Kato et al.
File Version	publisher
PubMed ID	35404232
DOI	10.7554/eLife.73990
Web of Science KeyUT	000790476900001
Related Url	isVersionOf https://doi.org/10.7554/eLife.73990

Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex

FullText URL	fulltext.pdf
Author	Nagao, Ryo\| Kato, Koji\| Kumazawa, Minoru\| Ifuku, Kentaro\| Yokono, Makio\| Suzuki, Takehiro\| Dohmae, Naoshi\| Akita, Fusamichi\| Akimoto, Seiji\| Miyazaki, Naoyuki\| Shen, Jian-Ren\|
Published Date	2022-04-01
Publication Title	Nature Communications
Volume	volume13
Issue	issue1
Publisher	Nature Portfolio
Start Page	1764
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2022
File Version	publisher
PubMed ID	35365610
DOI	10.1038/s41467-022-29294-5
Web of Science KeyUT	000777408600010
Related Url	isVersionOf https://doi.org/10.1038/s41467-022-29294-5

Structural basis for high selectivity of a rice silicon channel Lsi1

FullText URL	fulltext.pdf
Author	Saitoh, Yasunori\| Mitani-Ueno, Namiki\| Saito, Keisuke\| Matsuki, Kengo\| Huang, Sheng\| Yang, Lingli\| Yamaji, Naoki\| Ishikita, Hiroshi\| Shen, Jian-Ren\| Ma, Jian Feng\| Suga, Michihiro\|
Published Date	2021-10-29
Publication Title	Nature Communications
Volume	volume12
Issue	issue1
Publisher	Nature Portfolio
Start Page	6236
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2021
File Version	publisher
PubMed ID	34716344
DOI	10.1038/s41467-021-26535-x
Web of Science KeyUT	000712910500004
Related Url	isVersionOf https://doi.org/10.1038/s41467-021-26535-x

High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams

FullText URL	fulltext.pdf
Author	Kato, Koji\| Miyazaki, Naoyuki\| Hamaguchi, Tasuku\| Nakajima, Yoshiki\| Akita, Fusamichi\| Yonekura, Koji\| Shen, Jian-Ren\|
Published Date	2021-03-22
Publication Title	Communications Biology
Volume	volume4
Issue	issue1
Publisher	Springer
Start Page	382
ISSN	2399-3642
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
File Version	publisher
DOI	10.1038/s42003-021-01919-3
Related Url	isVersionOf https://doi.org/10.1038/s42003-021-01919-3