FullText URL fulltext.pdf
Author Thu, Yin Min| Suzawa, Ken| Tomida, Shuta| Ochi, Kosuke| Tsudaka, Shimpei| Takatsu, Fumiaki| Date, Keiichi| Matsuda, Naoki| Iwata, Kazuma| Nakata, Kentaro| Shien, Kazuhiko| Yamamoto, Hiromasa| Okazaki, Mikio| Sugimoto, Seiichiro| Toyooka, Shinichi|
Published Date 2024-05-17
Publication Title PLoS ONE
Volume volume19
Issue issue5
Publisher Public Library of Science
Start Page e0300644
ISSN 1932-6203
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2024 Thu et al.
File Version publisher
PubMed ID 38758826
DOI 10.1371/journal.pone.0300644
Web of Science KeyUT 001227109100078
Related Url isVersionOf https://doi.org/10.1371/journal.pone.0300644
FullText URL fulltext.pdf
Author Sasakura, Minori| Urakami, Hitoshi| Tachibana, Kota| Ikeda, Kenta| Hasui, Ken-Ichi| Matsuda, Yoshihiro| Sunagawa, Ko| Ennishi, Daisuke| Tomida, Shuta| Morizane, Shin|
Keywords AP-1 inhibitor Atopic dermatitis Baricitinib T-5224 Topical application
Published Date 2024-04
Publication Title Allergology International
Volume volume73
Issue issue2
Publisher Japanese Society of Allergology
Start Page 323
End Page 331
ISSN 1323-8930
NCID AA11091750
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2024 Japanese Society of Allergology.
File Version publisher
PubMed ID 38350816
DOI 10.1016/j.alit.2023.12.006
Web of Science KeyUT 001220243500001
Related Url isVersionOf https://doi.org/10.1016/j.alit.2023.12.006
FullText URL fulltext20240213-01.pdf
Author Urata, Tomohiro| Naoi, Yusuke| Jiang, Aixiang| Boyle, Merrill| Sunami, Kazutaka| Imai, Toshi| Nawa, Yuichiro| Hiramatsu, Yasushi| Yamamoto, Kazuhiko| Fujii, Soichiro| Yoshida, Isao| Yano, Tomofumi| Chijimatsu, Ryota| Murakami, Hiroyuki| Ikeuchi, Kazuhiro| Kobayashi, Hiroki| Tani, Katsuma| Ujiie, Hideki| Inoue, Hirofumi| Tomida, Shuta| Yamamoto, Akira| Kondo, Takumi| Fujiwara, Hideaki| Asada, Noboru| Nishimori, Hisakazu| Fujii, Keiko| Fujii, Nobuharu| Matsuoka, Ken-ichi| Sawada, Keisuke| Momose, Shuji| Tamaru, Jun-ichi| Nishikori, Asami| Sato, Yasuharu| Yoshino, Tadashi| Maeda, Yoshinobu| Scott, David W.| Ennishi, Daisuke|
Published Date 2023-12-14
Publication Title Blood Advances
Volume volume7
Issue issue24
Publisher American Society of Hematology
Start Page 7459
End Page 7470
ISSN 2473-9529
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 by The American Society of Hematology.
File Version publisher
PubMed ID 37552496
DOI 10.1182/bloodadvances.2023010402
Web of Science KeyUT 001141306600001
Related Url isVersionOf https://doi.org/10.1182/bloodadvances.2023010402
FullText URL fulltext.pdf
Author Tomioka, Yasuaki| Sugimoto, Seiichiro| Yamamoto, Haruchika| Tomida, Shuta| Shiotani, Toshio| Tanaka, Shin| Shien, Kazuhiko| Suzawa, Ken| Miyoshi, Kentaroh| Otani, Shinji| Yamamoto, Hiromasa| Okazaki, Mikio| Yamane, Masaomi| Toyooka, Shinichi|
Note The version of record of this article, first published in Scientific Reports, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41598-023-36143-y|
Published Date 2023-06-01
Publication Title Scientific Reports
Volume volume13
Issue issue1
Publisher nature portfolio
Start Page 8912
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2023
File Version publisher
PubMed ID 37264212
DOI 10.1038/s41598-023-36143-y
Web of Science KeyUT 001000430300041
Related Url isVersionOf https://doi.org/10.1038/s41598-023-36143-y
JaLCDOI 10.18926/AMO/65502
FullText URL 77_3_323.pdf
Author Makino, Keigo| Otani, Yoshihiro| Fujii, Kentaro| Ishida, Joji| Hirano, Shuichiro | Suruga, Yasuki| Washio, Kana| Nishida, Kenji| Yanai, Hiroyuki| Tomida, Shuta| Ennishi, Daisuke| Date, Isao|
Abstract In the current World Health Organization classification of central nervous system tumors, comprehensive genetic and epigenetic analyses are considered essential for precise diagnosis. A 14-year-old male patient who presented with a cerebellar tumor was initially diagnosed with glioblastoma and treated with radiation and concomitant temozolomide chemotherapy after resection. During maintenance temozolomide therapy, a new contrast-enhanced lesion developed in the bottom of the cavity formed by the resection. A second surgery was performed, but the histological findings in specimens from the second surgery were different from those of the first surgery. Although genome-wide DNA methylation profiling was conducted using frozen tissue for a precise diagnosis, the proportion of tumor cells was insufficient and only normal cerebellum was observed. We then performed comprehensive genetic analysis using formalin-fixed paraffin-embedded sections, which revealed MYCN amplification without alteration of IDH1, IDH2, or Histone H3. Finally, the patient was diagnosed with pediatric-type diffuse high-grade glioma, H3-wildtype and IDH-wildtype. In conclusion, comprehensive genetic and epigenetic analysis should be considered in pediatric brain tumor cases.
Keywords comprehensive genomic profiling pediatric brain tumor genome-wide DNA methylation MYCN
Amo Type Case Report
Publication Title Acta Medica Okayama
Published Date 2023-06
Volume volume77
Issue issue3
Publisher Okayama University Medical School
Start Page 323
End Page 330
ISSN 0386-300X
NCID AA00508441
Content Type Journal Article
language English
Copyright Holders Copyright Ⓒ 2023 by Okayama University Medical School
File Version publisher
Refereed True
PubMed ID 37357634
Web of Science KeyUT 001025850000001
FullText URL fulltext.pdf
Author Sekito, Takanori| Wada, Koichiro| Ishii, Ayano| Iwata, Takehiro| Matsubara, Takehiro| Tomida, Shuta| Watanabe, Masami| Araki, Motoo| Sadahira, Takuya|
Keywords cystitis vagina microbiota Lactobacillus urinary tract infection
Published Date 2023-05-18
Publication Title Frontiers in Microbiology
Volume volume14
Publisher Frontiers Media
Start Page 1187479
ISSN 1664-302X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Sekito, Wada, Ishii, Iwata, Matsubara, Tomida, Watanabe, Araki and Sadahira.
File Version publisher
PubMed ID 37275169
DOI 10.3389/fmicb.2023.1187479
Web of Science KeyUT 000998008400001
Related Url isVersionOf https://doi.org/10.3389/fmicb.2023.1187479
FullText URL fulltext.pdf
Author Ochi, Kosuke| Suzawa, Ken| Thu, Yin Min| Takatsu, Fumiaki| Tsudaka, Shimpei| Zhu, Yidan| Nakata, Kentaro| Takeda, Tatsuaki| Shien, Kazuhiko| Yamamoto, Hiromasa| Okazaki, Mikio| Sugimoto, Seiichiro| Shien, Tadahiko| Okamoto, Yoshiharu| Tomida, Shuta| Toyooka, Shinichi|
Keywords cancer-associated fibroblast drug resistance tranilast
Published Date 2022-07-24
Publication Title Cancer Science
Volume volume2022
Publisher Wiley
ISSN 1347-9032
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2022 The Authors.
File Version publisher
PubMed ID 35871750
DOI 10.1111/cas.15502
Web of Science KeyUT 000840374000001
Related Url isVersionOf https://doi.org/10.1111/cas.15502
FullText URL fulltext.pdf
Author Namba, Kei| Suzawa, Ken| Shien, Kazuhiko| Miura, Akihiro| Takahashi, Yuta| Miyauchi, Shunsaku| Araki, Kota| Nakata, Kentaro| Tomida, Shuta| Tanaka, Shin| Miyoshi, Kentaroh| Otani, Shinji| Yamamoto, Hiromasa| Okazaki, Mikio| Sugimoto, Seiichiro| Soh, Junichi| Yamane, Masaomi| Toyooka, Shinichi|
Published Date 2022-05-04
Publication Title Scientific Reports
Volume volume12
Issue issue1
Publisher Nature Portfolio
Start Page 7297
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2022
File Version publisher
PubMed ID 35508484
DOI 10.1038/s41598-022-11064-4
Web of Science KeyUT 000790941900040
Related Url isVersionOf https://doi.org/10.1038/s41598-022-11064-4
FullText URL fulltext.pdf
Author Higo, Hisao| Ohashi, Kadoaki| Tomida, Shuta| Okawa, Sachi| Yamamoto, Hiromasa| Sugimoto, Seiichiro| Senoo, Satoru| Makimoto, Go| Ninomiya, Kiichiro| Nakasuka, Takamasa| Nishii, Kazuya| Taniguchi, Akihiko| Kubo, Toshio| Ichihara, Eiki| Hotta, Katsuyuki| Miyahara, Nobuaki| Maeda, Yoshinobu| Toyooka, Shinichi| Kiura, Katsuyuki|
Keywords Idiopathic pulmonary fibrosis RNA sequencing Molecular therapeutic target Personalized therapy
Published Date 2022-02-07
Publication Title Respiratory Research
Volume volume23
Issue issue1
Publisher BMC
Start Page 20
ISSN 1465-993X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2022.
File Version publisher
PubMed ID 35130915
DOI 10.1186/s12931-022-01940-y
Web of Science KeyUT 000752386100002
Related Url isVersionOf https://doi.org/10.1186/s12931-022-01940-y
FullText URL fulltext.pdf
Author Oo, May Wathone| Kawai, Hotaka| Takabatake, Kiyofumi| Tomida, Shuta| Eguchi, Takanori| Ono, Kisho| Shan, Qiusheng| Ohara, Toshiaki| Yoshida, Saori| Omori, Haruka| Sukegawa, Shintaro| Nakano, Keisuke| Okamoto, Kuniaki| Sasaki, Akira| Nagatsuka, Hitoshi|
Published Date 2022-01-11
Publication Title JCI Insight
Volume volume7
Issue issue1
Publisher American Society for Clinical Investigation
Start Page e148960
ISSN 2379-3708
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2022, Oo et al.
File Version publisher
PubMed ID 34874922
DOI 10.1172/jci.insight.148960
Web of Science KeyUT 000743257400001
Related Url isVersionOf https://doi.org/10.1172/jci.insight.148960
FullText URL fulltext.pdf
Author Nakamura, Makoto| Meguri, Yusuke| Ikegawa, Shuntaro| Kondo, Takumi| Sumii, Yuichi| Fukumi, Takuya| Iwamoto, Miki| Sando, Yasuhisa| Sugiura, Hiroyuki| Asada, Noboru| Ennishi, Daisuke| Tomida, Shuta| Fukuda-Kawaguchi, Emi| Ishii, Yasuyuki| Maeda, Yoshinobu| Matsuoka, Ken-Ichi|
Published Date 2021-06-23
Publication Title Scientific Reports
Volume volume11
Issue issue1
Publisher Nature Research
Start Page 13125
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2021
File Version publisher
PubMed ID 34162921
DOI 10.1038/s41598-021-92526-z
Web of Science KeyUT 000669995600012
Related Url isVersionOf https://doi.org/10.1038/s41598-021-92526-z
FullText URL fulltext.pdf
Author Inoue, Hirofumi| Tomida, Shuta| Horiguchi, Shigeru| Kato, Hironari| Matsuoka, Hiromi| Sanehira, Etsuko| Matsuoka, Masashi| Yanai, Hiroyuki| Hirasawa, Akira| Toyooka, Shinichi|
Keywords cancer genomic profiling tests formalin‐fixed paraffin‐embedded (FFPE) tumor tissue genomic DNA extraction
Note This is the peer reviewed version of the following article: Hirofumi Inoue et. al. Best practices for the extraction of genomic DNA from formalin‐fixed paraffin‐embedded tumor tissue for cancer genomic profiling tests. Pathology International (2021), which has been published in final form at https://doi.org/10.1111/pin.13086. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions.
This fulltext is available in March 2022.|
Published Date 2021-03-03
Publication Title Pathology International
Volume volume71
Publisher Wiley
Start Page 360
End Page 364
ISSN 1320-5463
NCID AA10984364
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 33657250
DOI 10.1111/pin.13086
Web of Science KeyUT 000624843200001
Related Url isVersionOf https://doi.org/10.1111/pin.13086
JaLCDOI Training Medical Staff with Basic Skills for Data Science in Genomic Medicine
FullText URL fulltext.pdf
Author Tomida, Shuta| Morita, Mizuki| Yamashita, Noriyuki| Hirasawa, Akira| Toyooka, Shinichi|
Keywords genomic medicine tumor mutation burden biomedical data science bioinformatics
Published Date 2020-05-01
Publication Title YAKUGAKU ZASSHI
Volume volume140
Issue issue5
Publisher 日本薬学会
Start Page 657
End Page 661
ISSN 0031-6903
NCID AN00284903
Content Type Journal Article
language Japanese
OAI-PMH Set 岡山大学
Copyright Holders 日本薬学会
File Version publisher
PubMed ID 32378667
DOI 10.1248/yakushi.19-00217-2
Web of Science KeyUT 000596822500010
Related Url isVersionOf https://doi.org/10.1248/yakushi.19-00217-2
FullText URL fulltext.pdf
Author Nishii, Kazuya| Ohashi, Kadoaki| Tamura, Tomoki| Ninomiya, Kiichiro| Matsubara, Takehiro| Senoo, Satoru| Kano, Hirohisa| Watanabe, Hiromi| Oda, Naohiro| Makimoto, Go| Higo, Hisao| Kato, Yuka| Ninomiya, Takashi| Kubo, Toshio| Yamamoto, Hiromasa | Tomida, Shuta| Hotta, Katsuyuki| Tabata, Masahiro| Toyooka, Shinichi| Maeda, Yoshinobu| Kiura, Katsuyuki|
Keywords non-small cell lung cancer epidermal growth factor receptor mutations droplet digital PCR exhaled breath condensate EGFR-TKIs
Published Date 2020-12
Publication Title Oncology Letters
Volume volume20
Issue issue6
Publisher Spandidos Publications
Start Page 393
ISSN 1792-1074
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version publisher
PubMed ID 33193853
DOI 10.3892/ol.2020.12256
Web of Science KeyUT 000595649300005
Related Url isVersionOf https://doi.org/10.3892/ol.2020.12256
FullText URL fulltext.pdf figure1.tif figure2.tif figure3.tif spfigure1.tif spfigure2.tif SupTable1.xlsx
Author Ochi, Kosuke| Suzawa, Ken| Tomida, Shuta| Shien, Kazuhiko| Takano, Jui| Miyauchi, Shunsaku| Takeda, Tatsuaki| Miura, Akihiro| Araki, Kota| Nakata, Kentaro| Yamamoto, Hiromasa| Okazaki, Mikio| Sugimoto, Seiichiro| Shien, Tadahiko| Yamane, Masaomi| Azuma, Kazuo| Okamoto, Yoshiharu| Toyooka, Shinichi|
Keywords Monensin Epithelial-mesenchymal transition Non-small cell lung cancer Drug repositioning Drug resistance
Note This fulltext is available in Jul. 2021.|
Published Date 2020-08-27
Publication Title Biochemical and Biophysical Research Communications
Volume volume529
Issue issue3
Publisher Academic Press
Start Page 760
End Page 765
ISSN 0006-291X
NCID AA00564395
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 32736704
DOI 10.1016/j.bbrc.2020.06.077
Web of Science KeyUT 000555780500037
Related Url iaVersionOf https://doi.org/10.1016/j.bbrc.2020.06.077
Author Isoshima, Daichi| Yamashiro, Keisuke| Matsunaga, Kazuyuki| Taniguchi, Makoto| Matsubara, Takehiro| Tomida, Shuta| Ota, Shinzo| Sato, Michiyoshi| Shimoe, Yutaka| Kohriyama, Tatsuo| Arias, Zulema| Omori, Kazuhiro| Yamamoto, Tadashi| Takashiba, Shogo|
Keywords Microbiome Atherosclerosis Periodontitis Next-generating sequencing Oral bacteria
Note metadata only access|
Published Date 2020-05-19
Publication Title Odontology
Volume volume109
Publisher Springer
Start Page 239
End Page 249
ISSN 16181247
NCID AA11580928
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version none
PubMed ID 32430725
DOI 10.1007/s10266-020-00524-w
Web of Science KeyUT 000534632400001
Related Url isVersionOf https://doi.org/10.1007/s10266-020-00524-w
FullText URL fulltext.pdf
Author Matsubara, Takehiro| Soh, Junichi| Morita, Mizuki| Uwabo, Takahiro| Tomida, Shuta| Fujiwara, Toshiyoshi| Kanazawa, Susumu| Toyooka, Shinichi| Hirasawa, Akira|
Published Date 2020-02-27
Publication Title BioMed Research International
Volume volume2020
Publisher Hindawi
Start Page 9349132
ISSN 2314-6133
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 Takehiro Matsubara et al.
File Version publisher
PubMed ID 32185225
DOI 10.1155/2020/9349132
Web of Science KeyUT 000522222100002
Related Url isVersionOf https://doi.org/10.1155/2020/9349132
FullText URL fulltext.pdf
Author Takeda, Tatsuaki| Yamamoto, Hiromasa| Suzawa, Ken| Tomida, Shuta| Miyauchi, Shunsaku| Araki, Kota| Nakata, Kentaro| Miura, Akihiro| Namba, Kei| Shien, Kazuhiko| Soh, Junichi| Shien, Tadahiko| Kitamura, Yoshihisa| Sendo, Toshiaki| Toyooka, Shinichi|
Keywords breast cancer drug resistance lung cancer neratinib YES1
Published Date 2019-12-19
Publication Title Cancer Science
Volume volume111
Issue issue3
Publisher Wiley
Start Page 849
End Page 856
ISSN 1347-9032
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 The Authors.
File Version publisher
PubMed ID 31856375
DOI 10.1111/cas.14289
Web of Science KeyUT 000507433400001
Related Url isVersionOf https://doi.org/10.1111/cas.14289
FullText URL fulltext.pdf
Author Yoshioka, Takahiro| Shien, Kazuhiko| Takeda, Tatsuaki| Takahashi, Yuta| Kurihara, Eisuke| Ogoshi, Yusuke| Namba, Kei| Torigoe, Hidejiro| Sato, Hiroki| Tomida, Shuta| Yamamoto, Hiromasa| Soh, Junichi| Fujiwara, Toshiyoshi| Toyooka, Shinichi|
Keywords afatinib gastric cancer HER2 MET YES1
Published Date 2019-06-04
Publication Title Cancer Science
Volume volume110
Issue issue8
Publisher Wiley Open Access
Start Page 2549
End Page 2557
ISSN 1347-9032
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 The Authors.
File Version publisher
PubMed ID 31162771
DOI 10.1111/cas.14089
Web of Science KeyUT 000478616800022
Related Url isVersionOf https://doi.org/10.1111/cas.14089
FullText URL J_Thorac_Oncol_201907017.pdf
Author Makimoto, Go| Ohashi, Kadoaki| Tomida, Shuta| Nishii, Kazuya| Matsubara, Takehiro| Kayatani, Hiroe| Higo, Hisao| Ninomiya, Kiichiro| Sato, Akiko| Watanabe, Hiromi| Kano, Hirohisa| Ninomiya, Takashi| Kubo, Toshio| Rai, Kammei| Ichihara, Eiki| Hotta, Katsuyuki| Tabata, Masahiro| Toyooka, Shinichi| Takata, Minoru| Maeda, Yoshinobu| Kiura, Katsuyuki|
Keywords ALK G1202R Alectinib Amphiregulin MET NSCLC
Published Date 2019-07-30
Publication Title Journal of Thoracic Oncology
Volume volume14
Issue issue11
Publisher Elsevier
Start Page 2009
End Page 2018
ISSN 15560864
NCID AA12058455
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.
File Version author
PubMed ID 31374369
DOI 10.1016/j.jtho.2019.07.017
Web of Science KeyUT 000492678300025
Related Url isVersionOf https://doi.org/10.1016/j.jtho.2019.07.017