| ID | 57461 |
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| Author |
Sumi, Tomonari
Department of Chemistry, Faculty of Science, Okayama University,
ORCID
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Mitsutake, Ayori
Department of Physics, Keio University,
Maruyama, Yutaka
Department of Physics, Keio University,
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| Abstract | The three-dimensional reference interaction site model (3D-RISM) theory, which is one of the most applicable integral equation theories for molecular liquids, overestimates the absolute values of solvation-free-energy (SFE) for large solute molecules in water. To improve the free-energy density functional for the SFE of solute molecules, we propose a reference-modified density functional theory (RMDFT) that is a general theoretical approach to construct the free-energy density functional systematically. In the RMDFT formulation, hard-sphere (HS) fluids are introduced as the reference system instead of an ideal polyatomic molecular gas, which has been regarded as the appropriate reference system of the interaction-site-model density functional theory for polyatomic molecular fluids. We show that using RMDFT with a reference HS system can significantly improve the absolute values of the SFE for a set of neutral amino acid side-chain analogues as well as for 504 small organic molecules.
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| Keywords | salvation-free-energy
classical density functional theory
3D-RISM theory
water
amino acid side-chain
chignolin
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| Published Date | 2015-05-31
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| Publication Title |
Journal of Computational Chemistry
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| Volume | volume36
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| Issue | issue18
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| Start Page | 1359
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| End Page | 1369
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| ISSN | 01928651
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| NCID | AA00257341
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| Content Type |
Journal Article
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| language |
English
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| OAI-PMH Set |
岡山大学
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| File Version | author
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| Related Url | isVersionOf https://doi.org/10.1002/jcc.23942
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| Funder Name |
Ministry of Education, Culture, Sports, Science and Technology
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