Shen, Jian-Ren - OU Author List - OKAYAMA UNIVERSITY SCIENTIFIC ACHIEVEMENT REPOSITORY

Conformational Flexibility of D1-Glu189: A Crucial Determinant in Substrate Water Selection, Positioning, and Stabilization within the Oxygen-Evolving Complex of Photosystem II

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Author	Isobe, Hiroshi\| Suzuki, Takayoshi\| Suga, Michihiro\| Shen, Jian-Ren\| Yamaguchi, Kizashi\|
Published Date	2024-12-05
Publication Title	ACS Omega
Volume	volume9
Issue	issue50
Publisher	American Chemical Society
Start Page	50041
End Page	50048
ISSN	2470-1343
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2024 The Authors.
File Version	publisher
DOI	10.1021/acsomega.4c09981
Web of Science KeyUT	001370921200001
Related Url	isVersionOf https://doi.org/10.1021/acsomega.4c09981

Structure of a diatom photosystem II supercomplex containing a member of Lhcx family and dimeric FCPII

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Author	Feng, Yue\| Li, Zhenhua\| Li, Xiaoyi\| Shen, Lili\| Liu, Xueyang\| Zhou, Cuicui\| Zhang, Jinyang\| Sang, Min\| Han, Guangye\| Yang, Wenqiang\| Kuang, Tingyun\| Wang, Wenda\| Shen, Jian-Ren\|
Published Date	2023-10-25
Publication Title	Science Advances
Volume	volume9
Issue	issue43
Publisher	American Association for the Advancement of Science
Start Page	eadi8446
ISSN	2375-2548
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Authors
File Version	publisher
PubMed ID	37878698
DOI	10.1126/sciadv.adi8446
Web of Science KeyUT	001261640600010
Related Url	isVersionOf https://doi.org/10.1126/sciadv.adi8446

Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea

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Author	Mao, Zhiyuan\| Li, Xingyue\| Li, Zhenhua\| Shen, Liangliang\| Li, Xiaoyi\| Yang, Yanyan\| Wang, Wenda\| Kuang, Tingyun\| Shen, Jian-Ren\| Han, Guangye\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-024-48878-x\|
Published Date	2024-05-28
Publication Title	Nature Communications
Volume	volume15
Issue	issue1
Publisher	Nature Portfolio
Start Page	4535
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2024
File Version	publisher
PubMed ID	38806516
DOI	10.1038/s41467-024-48878-x
Web of Science KeyUT	001234660500031
Related Url	isVersionOf https://doi.org/10.1038/s41467-024-48878-x

Oxygen-evolving photosystem II structures during S1–S2–S3 transitions

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Author	Li, Hongjie\| Nakajima, Yoshiki\| Nango, Eriko\| Owada, Shigeki\| Yamada, Daichi\| Hashimoto, Kana\| Luo, Fangjia\| Tanaka, Rie\| Akita, Fusamichi\| Kato, Koji\| Kang, Jungmin\| Saitoh, Yasunori\| Kishi, Shunpei\| Yu, Huaxin\| Matsubara, Naoki\| Fujii, Hajime\| Sugahara, Michihiro\| Suzuki, Mamoru\| Masuda, Tetsuya\| Kimura, Tetsunari\| Thao, Tran Nguyen\| Yonekura, Shinichiro\| Yu, Long-Jiang\| Tosha, Takehiko\| Tono, Kensuke\| Joti, Yasumasa\| Hatsui, Takaki\| Yabashi, Makina\| Kubo, Minoru\| Iwata, So\| Isobe, Hiroshi\| Yamaguchi, Kizashi\| Suga, Michihiro\| Shen, Jian-Ren\|
Note	The version of record of this article, first published in Nature, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41586-023-06987-5\|
Published Date	2024-01-31
Publication Title	Nature
Volume	volume626
Issue	issue7999
Publisher	Springer Science and Business Media LLC
Start Page	670
End Page	677
ISSN	0028-0836
NCID	AA00752384
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2024
File Version	publisher
PubMed ID	38297122
DOI	10.1038/s41586-023-06987-5
Web of Science KeyUT	001179152900004
Related Url	isVersionOf https://doi.org/10.1038/s41586-023-06987-5

Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana

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Author	Zhao, Songhao\| Shen, Lili\| Li, Xiaoyi\| Tao, Qiushuang\| Li, Zhenhua\| Xu, Caizhe\| Zhou, Cuicui\| Yang, Yanyan\| Sang, Min\| Han, Guangye\| Yu, Long-Jiang\| Kuang, Tingyun\| Shen, Jian-Ren\| Wang, Wenda\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-023-44055-8\|
Published Date	2023-12-09
Publication Title	Nature Communications
Volume	volume14
Issue	issue1
Publisher	Nature Portfolio
Start Page	8164
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2023
File Version	publisher
PubMed ID	38071196
DOI	10.1038/s41467-023-44055-8
Web of Science KeyUT	001118826100025
Related Url	isVersionOf https://doi.org/10.1038/s41467-023-44055-8

Structural insights into the action mechanisms of artificial electron acceptors in photosystem II

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Author	Kamada, Shinji\| Nakajima, Yoshiki\| Shen, Jian-Ren\|
Keywords	Photosystem II photosynthesis electron transfer structural biology crystal structure electron acceptor
Published Date	2023-07
Publication Title	Journal of Biological Chemistry
Volume	volume299
Issue	issue7
Publisher	Elsevier
Start Page	104839
ISSN	1083-351X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Authors.
File Version	publisher
PubMed ID	37209822
DOI	10.1016/j.jbc.2023.104839
Web of Science KeyUT	001166336800001
Related Url	isVersionOf https://doi.org/10.1016/j.jbc.2023.104839

Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120

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Author	Nagao, Ryo\| Kato, Koji\| Hamaguchi, Tasuku\| Ueno, Yoshifumi\| Tsuboshita, Naoki\| Shimizu, Shota\| Furutani, Miyu\| Ehira, Shigeki\| Nakajima, Yoshiki\| Kawakami, Keisuke\| Suzuki, Takehiro\| Dohmae, Naoshi\| Akimoto, Seiji\| Yonekura, Koji\| Shen, Jian-Ren\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-023-36504-1\|
Published Date	2023-02-17
Publication Title	Nature Communications
Volume	volume14
Issue	issue1
Publisher	Nature Portfolio
Start Page	920
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2023
File Version	publisher
PubMed ID	36805598
DOI	10.1038/s41467-023-36504-1
Web of Science KeyUT	001002516000009
Related Url	isVersionOf https://doi.org/10.1038/s41467-023-36504-1

Geometric, electronic and spin structures of the CaMn4O5 catalyst for water oxidation in oxygen-evolving photosystem II. Interplay between experiments and theoretical computations

FullText URL	fulltext20221122-4.pdf
Author	Yamaguchi, Kizashi\| Shoji, Mitsuo\| Isobe, Hiroshi\| Kawakami, Takashi\| Miyagawa, Koichi\| Suga, Michihiro\| Akita, Fusamichi\| Shen, Jian-Ren\|
Keywords	Water oxidation Oxygen evolution Photosystem II HR XRD SFX XFEL QM/MM calculation DLPNO CCSD(T-0) computations, Oxyl radical character
Note	(C) 2022 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 License. http://creativecommons.org/licenses/by-nc-nd/4.0/. This is the accepted manuscript version. The formal published version is available at https://doi.org/10.1016/j.ccr.2022.214742\| This full-text file will be available in Aug. 2024.\|
Published Date	2022-11
Publication Title	Coordination Chemistry Reviews
Volume	volume471
Publisher	Elsevier BV
Start Page	214742
ISSN	0010-8545
NCID	AA00619249
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2022 Elsevier B.V.
File Version	author
DOI	10.1016/j.ccr.2022.214742
Web of Science KeyUT	000879286600003
Related Url	isVersionOf https://doi.org/10.1016/j.ccr.2022.214742

Roles of the Flexible Primary Coordination Sphere of the Mn4CaOx Cluster: What Are the Immediate Decay Products of the S-3 State?

FullText URL	fulltext20221114-1.pdf
Author	Isobe, Hiroshi\| Shoji, Mitsuo\| Suzuki, Takayoshi\| Shen, Jian-Ren\| Yamaguchi, Kizashi\|
Note	This document is the Accepted Manuscript version of a Published Work that appeared in final form in The Journal of Physical Chemistry B, copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see https://doi.org/10.1021/acs.jpcb.2c02596\| This full-text will be available in Sep. 2023.\|
Published Date	2022-09-15
Publication Title	The Journal of Physical Chemistry B
Volume	volume126
Issue	issue38
Publisher	American Chemical Society (ACS)
Start Page	7212
End Page	7228
ISSN	1520-6106
NCID	AA11114073
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2022 American Chemical Society
File Version	author
PubMed ID	36107406
DOI	10.1021/acs.jpcb.2c02596
Web of Science KeyUT	000863255500001
Related Url	isVersionOf https://doi.org/10.1021/acs.jpcb.2c02596

Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus

FullText URL	fulltext.pdf
Author	Kato, Koji\| Hamaguchi, Tasuku\| Nagao, Ryo\| Kawakami, Keisuke\| Ueno, Yoshifumi\| Suzuki, Takehiro\| Uchida, Hiroko\| Murakami, Akio\| Nakajima, Yoshiki\| Yokono, Makio\| Akimoto, Seiji\| Dohmae, Naoshi\| Yonekura, Koji\| Shen, Jian-Ren\|
Keywords	photosystem I cryo-EM low-energy Chl Gloeobacter Other
Published Date	2022-04-11
Publication Title	Elife
Volume	volume11
Publisher	eLIFE SCIENCES PUBL LTD
Start Page	e73990
ISSN	2050-084X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© Kato et al.
File Version	publisher
PubMed ID	35404232
DOI	10.7554/eLife.73990
Web of Science KeyUT	000790476900001
Related Url	isVersionOf https://doi.org/10.7554/eLife.73990

Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex

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Author	Nagao, Ryo\| Kato, Koji\| Kumazawa, Minoru\| Ifuku, Kentaro\| Yokono, Makio\| Suzuki, Takehiro\| Dohmae, Naoshi\| Akita, Fusamichi\| Akimoto, Seiji\| Miyazaki, Naoyuki\| Shen, Jian-Ren\|
Published Date	2022-04-01
Publication Title	Nature Communications
Volume	volume13
Issue	issue1
Publisher	Nature Portfolio
Start Page	1764
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2022
File Version	publisher
PubMed ID	35365610
DOI	10.1038/s41467-022-29294-5
Web of Science KeyUT	000777408600010
Related Url	isVersionOf https://doi.org/10.1038/s41467-022-29294-5

Structural basis for high selectivity of a rice silicon channel Lsi1

FullText URL	fulltext.pdf
Author	Saitoh, Yasunori\| Mitani-Ueno, Namiki\| Saito, Keisuke\| Matsuki, Kengo\| Huang, Sheng\| Yang, Lingli\| Yamaji, Naoki\| Ishikita, Hiroshi\| Shen, Jian-Ren\| Ma, Jian Feng\| Suga, Michihiro\|
Published Date	2021-10-29
Publication Title	Nature Communications
Volume	volume12
Issue	issue1
Publisher	Nature Portfolio
Start Page	6236
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2021
File Version	publisher
PubMed ID	34716344
DOI	10.1038/s41467-021-26535-x
Web of Science KeyUT	000712910500004
Related Url	isVersionOf https://doi.org/10.1038/s41467-021-26535-x

High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams

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Author	Kato, Koji\| Miyazaki, Naoyuki\| Hamaguchi, Tasuku\| Nakajima, Yoshiki\| Akita, Fusamichi\| Yonekura, Koji\| Shen, Jian-Ren\|
Published Date	2021-03-22
Publication Title	Communications Biology
Volume	volume4
Issue	issue1
Publisher	Springer
Start Page	382
ISSN	2399-3642
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
File Version	publisher
DOI	10.1038/s42003-021-01919-3
Related Url	isVersionOf https://doi.org/10.1038/s42003-021-01919-3

Structure of photosystem I-LHCI-LHCII from the green alga Chlamydomonas reinhardtii in State 2

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Author	Huang, Zihui\| Shen, Liangliang\| Wang, Wenda\| Mao, Zhiyuan\| Yi, Xiaohan\| Kuang, Tingyun\| Shen, Jian-Ren\| Zhang, Xing\| Han, Guangye\|
Published Date	2021-02-17
Publication Title	Nature Communications
Volume	volume12
Issue	issue1
Publisher	Nature
Start Page	1100
ISSN	2041-1723
NCID	AA12645905
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2021
File Version	publisher
PubMed ID	33597543
DOI	10.1038/s41467-021-21362-6
Web of Science KeyUT	000621232800019
Related Url	isVersionOf https://doi.org/10.1038/s41467-021-21362-6

Antenna arrangement and energy-transfer pathways of PSI-LHCI from the moss Physcomitrella patens

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Author	Yan, Qiujing\| Zhao, Liang\| Wang, Wenda\| Pi, Xiong\| Han, Guangye\| Wang, Jie\| Cheng, Lingpeng\| He, Yi-Kun\| Kuang, Tingyun\| Qin, Xiaochun\| Sui, Sen-Fang\| Shen, Jian-Ren\|
Published Date	2021-02-16
Publication Title	Cell Discovery
Volume	volume7
Issue	issue1
Publisher	Springer Nature
Start Page	10
ISSN	2056-5968
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2021
File Version	publisher
PubMed ID	33589616
DOI	10.1038/s41421-021-00242-9
Web of Science KeyUT	000618354400001
Related Url	isVersionOf https://doi.org/10.1038/s41421-021-00242-9

Exploring reaction pathways for the structural rearrangements of the Mn cluster induced by water binding in the S3 state of the oxygen evolving complex of photosystem II

FullText URL	fulltext.pdf
Author	Isobe, Hiroshi\| Shoji, Mitsuo\| Suzuki, Takayoshi\| Shen, Jian-Ren\| Yamaguchi, Kizashi\|
Keywords	Photosynthesis Water oxidation Photosystem II Oxygen evolving complex Mn4CaO6 cluster Ligand environment
Note	© 2020 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 License. http://creativecommons.org/licenses/by-nc-nd/4.0/. This is the accepted manuscript version. The formal published version is available at [https://doi.org/10.1016/j.jphotochem.2020.112905] . \|
Published Date	2021-01-15
Publication Title	Journal of Photochemistry and Photobiology A: Chemistry
Volume	volume405
Publisher	Elsevier
Start Page	112905
ISSN	1010-6030
NCID	AA10684407
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2020 Elsevier B.V.
File Version	author
DOI	10.1016/j.jphotochem.2020.112905
Official Url	https://www.sciencedirect.com/science/article/abs/pii/S1010603020307024\|
Related Url	isVersionOf https://doi.org/10.1016/j.jphotochem.2020.112905

Structural basis for energy transfer in a huge diatom PSI-FCPI supercomplex

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Author	Xu, Caizhe\| Pi, Xiong\| Huang, Yawen\| Han, Guangye\| Chen, Xiaobo\| Qin, Xiaochun\| Huang, Guoqiang\| Zhao, Songhao\| Yang, Yanyan\| Kuang, Tingyun\| Wang, Wenda\| Sui, Sen-Fang\| Shen, Jian-Ren\|
Keywords	Bioenergetics Cryoelectron microscopy Photosystem I
Published Date	2020-10-08
Publication Title	Nature Communications
Volume	volume11
Issue	issue1
Publisher	Nature Research
Start Page	5081
ISSN	2041-1723
NCID	AA12645905
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2020
File Version	publisher
PubMed ID	33033236
DOI	10.1038/s41467-020-18867-x
Web of Science KeyUT	000581918200012
Related Url	isVersionOf https://doi.org/10.1038/s41467-020-18867-x

Spectral tuning of light-harvesting complex II in the siphonous alga Bryopsis corticulans and its effect on energy transfer dynamics

FullText URL	fulltext.pdf
Author	Akhtar, Parveen\| Nowakowski, Paweł J.\| Wang, Wenda\| Do, Thanh Nhut\| Zhao, Songhao\| Siligardi, Giuliano\| Garab, Győző\| Shen, Jian-Ren\| Tan, Howe-Siang\| Lambrev, Petar H.\|
Keywords	Circular dichroism Light-harvesting complexes Marine algae Photosynthesis Time-resolved spectroscopy Two-dimensional spectroscopy
Published Date	2020-07-01
Publication Title	Biochimica et Biophysica Acta (BBA) - Bioenergetics
Volume	volume1861
Issue	issue7
Publisher	Elsevier
Start Page	148191
ISSN	0005-2728
NCID	AA00564646
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2020 The Authors
File Version	publisher
PubMed ID	32201306
DOI	10.1016/j.bbabio.2020.148191
Web of Science KeyUT	000536941400006
Related Url	isVersionOf https://doi.org/10.1016/j.bbabio.2020.148191

Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins

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Author	Akita, Fusamichi\| Nagao, Ryo\| Kato, Koji\| Nakajima, Yoshiki\| Yokono, Makio\| Ueno, Yoshifumi\| Suzuki, Takehiro\| Dohmae, Naoshi\| Shen, Jian-Ren\| Akimoto, Seiji\| Miyazaki, Naoyuki\|
Keywords	Cryoelectron microscopy Photosystem I
Published Date	2020-05-11
Publication Title	Communications Biology
Volume	volume3
Issue	issue1
Publisher	Nature
Start Page	232
ISSN	2399-3642
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2020
File Version	publisher
PubMed ID	32393811
DOI	10.1038/s42003-020-0949-6
Web of Science KeyUT	000534339100004
Related Url	isVersionOf https://doi.org/10.1038/s42003-020-0949-6

Structural basis for assembly and function of a diatom photosystem I-light-harvesting supercomplex

FullText URL	fulltext.pdf
Author	Nagao, Ryo\| Kato, Koji\| Ifuku, Kentaro\| Suzuki, Takehiro\| Kumazawa, Minoru\| Uchiyama, Ikuo\| Kashino, Yasuhiro\| Dohmae, Naoshi\| Akimoto, Seiji\| Shen, Jian-Ren\| Miyazaki, Naoyuki\| Akita, Fusamichi\|
Published Date	2020-05-18
Publication Title	Nature Communications
Volume	volume11
Issue	issue1
Publisher	Nature Research
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2020
File Version	publisher
PubMed ID	32424145
DOI	10.1038/s41467-020-16324-3
Web of Science KeyUT	000536699300001
Related Url	isVersionOf https://doi.org/10.1038/s41467-020-16324-3