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ID 68970
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Author
Isobe, Hiroshi
Suzuki, Takayoshi Research Institute for Interdisciplinary Science, Okayama University ORCID Kaken ID publons researchmap
Suga, Michihiro Research Institute for Interdisciplinary Science, Okayama University ORCID Kaken ID researchmap
Shen, Jian-Ren Research Institute for Interdisciplinary Science, Okayama University ORCID Kaken ID publons researchmap
Yamaguchi, Kizashi Center for Quantum Information and Quantum Biology, Osaka University
Abstract
Photosynthetic water oxidation, vital for dioxygen production and light energy conversion, is catalyzed by the oxygen-evolving complex of photosystem II, where the inorganic Mn4CaO5 cluster acts as the catalytic core. In this study, we investigate the functional significance of collective motions of amino acid side chains within the primary coordination sphere of the Mn cluster, focusing on their role in modulating the energetic demands for catalytic transformations in the S3 state. We applied regularized canonical correlation analysis to quantitatively correlate the three-dimensional arrangement of coordinating atoms with catalytic driving forces computed via density functional theory. Our analysis reveals that distinct collective side chain motions profoundly influence the energetic requirements for structural reconfigurations of the Mn cluster, achieved through expansion and contraction of the ligand cavity while fine-tuning its geometry to stabilize key intermediates. Complementary predictions from a neural network-based machine learning model indicate that the coordination sphere exerts a variable energetic impact on the catalytic transformations of the Mn cluster, depending on the S-state environment. Integrated computational analyses suggest that the extended lifetime of the S3YZ˙ state, consistently observed after three flash illuminations, may result from slow, progressive protein dynamics that continuously reshape the energy landscape, thereby shifting the equilibrium positions of rapid, reversible chemical processes over time. Overall, our findings demonstrate that collective motions in the primary coordination sphere constitute an active, dynamic framework essential for the efficient execution of multi-electron catalysis under ambient conditions, while simultaneously achieving a high selectivity with irreversible nature required for effective 3O2 evolution.
Published Date
2025
Publication Title
Chemical Science
Volume
volume16
Issue
issue26
Publisher
Royal Society of Chemistry (RSC)
Start Page
12024
ISSN
2041-6520
NCID
AA12555653
Content Type
Journal Article
language
English
OAI-PMH Set
岡山大学
Copyright Holders
© 2025 The Author(s).
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Related Url
isVersionOf https://doi.org/10.1039/d5sc02386f
License
http://creativecommons.org/licenses/by-nc/3.0/
助成情報
22K05317: 光合成マンガンクラスターの機能発現と連動したアミノ酸配位子の経時的構造変化の役割 ( 独立行政法人日本学術振興会 / Japan Society for the Promotion of Science )