Sudo, Yuki - OU Author List - OKAYAMA UNIVERSITY SCIENTIFIC ACHIEVEMENT REPOSITORY

Optogenetic Cancer Therapy Using the Light-Driven Outward Proton Pump Rhodopsin Archaerhodopsin-3 (AR3)

Author	Nakao, Shin\| Kojima, Keiichi\| Sato, Keita\| Kemmotsu, Naoya\| Ohuchi, Hideyo\| Togashi, Yosuke\| Sudo, Yuki\|
Note	This document is the Accepted Manuscript version of a Published Work that appeared in final form in Journal of the American Chemical Society, copyright © 2025 American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see https://doi.org/10.1021/jacs.5c13053.\| This fulltext file will be available in Nov. 2026.\|
Published Date	2025-11-04
Publication Title	Journal of the American Chemical Society
Publisher	American Chemical Society (ACS)
ISSN	0002-7863
NCID	AA00692602
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2025 American Chemical Society
File Version	author
PubMed ID	41186408
DOI	10.1021/jacs.5c13053
Web of Science KeyUT	001607655700001
Related Url	isVersionOf https://doi.org/10.1021/jacs.5c13053

Cyanorhodopsin-II represents a yellow-absorbing proton-pumping rhodopsin clade within cyanobacteria

FullText URL	fulltext.pdf suppl.docx
Author	Hasegawa-Takano, Masumi\| Hosaka, Toshiaki\| Kojima, Keiichi\| Nishimura, Yosuke\| Kurihara, Marie\| Nakajima, Yu\| Ishizuka-Katsura, Yoshiko\| Kimura-Someya, Tomomi\| Shirouzu, Mikako\| Sudo, Yuki\| Yoshizawa, Susumu\|
Keywords	cyanobacteria microbial rhodopsin ecology evolution
Published Date	2024-01
Publication Title	The ISME Journal
Volume	volume18
Issue	issue1
Publisher	Oxford University Press (OUP)
Start Page	wrae175
ISSN	1751-7362
NCID	AA12230488
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2024.
File Version	publisher
PubMed ID	39485071
DOI	10.1093/ismejo/wrae175
Web of Science KeyUT	001346372900001
Related Url	isVersionOf https://doi.org/10.1093/ismejo/wrae175

A repertoire of visible light–sensitive opsins in the deep-sea hydrothermal vent shrimp Rimicaris hybisae

FullText URL	fulltext.pdf suppl.docx
Author	Nagata, Yuya\| Miyamoto, Norio\| Sato, Keita\| Nishimura, Yosuke\| Tanioka, Yuki\| Yamanaka, Yuji\| Yoshizawa, Susumu\| Takahashi, Kuto\| Obayashi, Kohei\| Tsukamoto, Hisao\| Takai, Ken\| Ohuchi, Hideyo\| Yamashita, Takahiro\| Sudo, Yuki\| Kojima, Keiichi\|
Keywords	rhodopsin opsin G protein–coupled receptor signal transduction photoreceptor vision photobiology vent shrimp deep sea molecular evolution
Published Date	2025-07
Publication Title	Journal of Biological Chemistry
Volume	volume301
Issue	issue7
Publisher	Elsevier BV
Start Page	110291
ISSN	0021-9258
NCID	AA00251083
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2025 The Authors.
File Version	publisher
PubMed ID	40436317
DOI	10.1016/j.jbc.2025.110291
Related Url	isVersionOf https://doi.org/10.1016/j.jbc.2025.110291

Roles of basic amino acid residues in substrate binding and transport of the light-driven anion pump Synechocystis halorhodopsin (SyHR)

FullText URL	fulltext.pdf
Author	Nakama, Masaki\| Noji, Tomoyasu\| Kojima, Keiichi\| Yoshizawa, Susumu\| Ishikita, Hiroshi\| Sudo, Yuki\|
Keywords	microbial rhodopsin anion transport retinal membrane protein photobiology
Published Date	2025-04
Publication Title	Journal of Biological Chemistry
Volume	volume301
Issue	issue4
Publisher	Elsevier
Start Page	108334
ISSN	1083-351X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2025 The Authors.
File Version	publisher
PubMed ID	39984052
DOI	10.1016/j.jbc.2025.108334
Web of Science KeyUT	001450594900001
Related Url	isVersionOf https://doi.org/10.1016/j.jbc.2025.108334

Bidirectional Optical Control of Proton Motive Force in Escherichia coli Using Microbial Rhodopsins

FullText URL	fulltext20240716-03.pdf
Author	Nakanishi, Kotaro\| Kojima, Keiichi\| Sowa, Yoshiyuki\| Sudo, Yuki\|
Note	This document is the Accepted Manuscript version of a Published Work that appeared in final form in Journal of Physical Chemistry B, copyright © 2024 American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see https://doi.org/10.1021/acs.jpcb.4c03027.\| This fulltext file will be available in Aug. 2025.\|
Published Date	2024-07-01
Publication Title	The Journal of Physical Chemistry B
Volume	volume128
Issue	issue27
Publisher	American Chemical Society (ACS)
Start Page	6509
End Page	6517
ISSN	1520-6106
NCID	AA11114073
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2024 American Chemical Society
File Version	author
PubMed ID	38949422
DOI	10.1021/acs.jpcb.4c03027
Web of Science KeyUT	001261316100001
Related Url	isVersionOf https://doi.org/10.1021/acs.jpcb.4c03027

Large-volume focus control at 10 MHz refresh rate via fast line-scanning amplitude-encoded scattering-assisted holography

FullText URL	fulltext.pdf
Author	Shibukawa, Atsushi\| Higuchi, Ryota\| Song, Gookho\| Mikami, Hideharu\| Sudo, Yuki\| Jang, Mooseok\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-024-47009-w\|
Published Date	2024-04-08
Publication Title	Nature Communications
Volume	volume15
Issue	issue1
Publisher	Nature Portfolio
Start Page	2926
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2024
File Version	publisher
PubMed ID	38589389
DOI	10.1038/s41467-024-47009-w
Web of Science KeyUT	001198902100006
Related Url	isVersionOf https://doi.org/10.1038/s41467-024-47009-w

Identification of a Functionally Efficient and Thermally Stable Outward Sodium-Pumping Rhodopsin (BeNaR) from a Thermophilic Bacterium

FullText URL	fulltext20231011-03.pdf
Author	Kurihara, Marie\| Thiel, Vera\| Takahashi, Hirona\| Kojima, Keiichi\| Ward, David M.\| Bryant, Donald A.\| Sakai, Makoto\| Yoshizawa, Susumu\| Sudo, Yuki\|
Keywords	rhodopsin ion transport retinal isomerization optogenetics
Published Date	2023-02-01
Publication Title	Chemical and Pharmaceutical Bulletin
Volume	volume71
Issue	issue2
Publisher	Pharmaceutical Society of Japan
Start Page	154
End Page	164
ISSN	0009-2363
NCID	AA00602100
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Pharmaceutical Society of Japan
File Version	publisher
PubMed ID	36724978
DOI	10.1248/cpb.c22-00774
Web of Science KeyUT	000964953300013
Related Url	isVersionOf https://doi.org/10.1248/cpb.c22-00774

Expression of microbial rhodopsins in Escherichia coli and their extraction and purification using styrene-maleic acid copolymers

FullText URL	fulltext.pdf
Author	Kojima, Keiichi\| Sudo, Yuki\|
Published Date	2022-03-18
Publication Title	STAR Protocols
Volume	volume3
Issue	issue1
Publisher	Cell Press
Start Page	101046
ISSN	2666-1667
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2021
File Version	publisher
PubMed ID	34984357
DOI	10.1016/j.xpro.2021.101046
Web of Science KeyUT	001055085700004
Related Url	isVersionOf https://doi.org/10.1016/j.xpro.2021.101046

Demonstration of iodide-dependent UVA-triggered growth inhibition in Saccharomyces cerevisiae cells and identification of its suppressive molecules

FullText URL	fulltext20230828-02.pdf
Author	Ono, Ryota\| Saeki, Nozomu\| Kojima, Keiichi\| Moriya, Hisao\| Sudo, Yuki\|
Keywords	UVA Saccharomyces cerevisiae Iodide Growth inhibition Suppressive molecule
Note	© 2023 Elsevier Inc. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/\| This fulltext file will be available in Oct. 2024.\|
Published Date	2023-10-15
Publication Title	Biochemical and Biophysical Research Communications
Volume	volume677
Publisher	Elsevier BV
Start Page	1
End Page	5
ISSN	0006-291X
NCID	AA00564395
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 Elsevier Inc.
File Version	author
PubMed ID	37523893
DOI	10.1016/j.bbrc.2023.07.048
Web of Science KeyUT	001047346900001
Related Url	isVersionOf https://doi.org/10.1016/j.bbrc.2023.07.048

Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota

FullText URL	fulltext.pdf
Author	Jaunet-Lahary, Titouan\| Shimamura, Tatsuro\| Hayashi, Masahiro\| Nomura, Norimichi\| Hirasawa, Kouta\| Shimizu, Tetsuya\| Yamashita, Masao\| Tsutsumi, Naotaka\| Suehiro, Yuta\| Kojima, Keiichi\| Sudo, Yuki\| Tamura, Takashi\| Iwanari, Hiroko\| Hamakubo, Takao\| Iwata, So\| Okazaki, Kei-Ichi\| Hirai, Teruhisa\| Yamashita, Atsuko\|
Note	The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-023-36883-5\|
Published Date	2023-04-03
Publication Title	Nature Communications
Volume	volume14
Issue	issue1
Publisher	Nature Portfolio
Start Page	1730
ISSN	2041-1723
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2023
File Version	publisher
PubMed ID	37012268
DOI	10.1038/s41467-023-36883-5
Web of Science KeyUT	001002031500007
Related Url	isVersionOf https://doi.org/10.1038/s41467-023-36883-5

A blue-shifted anion channelrhodopsin from the Colpodellida alga Vitrella brassicaformis

FullText URL	fulltext.pdf
Author	Kojima, Keiichi\| Kawanishi, Shiho\| Nishimura, Yosuke\| Hasegawa, Masumi\| Nakao, Shin\| Nagata, Yuya\| Yoshizawa, Susumu\| Sudo, Yuki\|
Note	The version of record of this article, first published in Scientific Reports, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41598-023-34125-8\|
Published Date	2023-04-28
Publication Title	Scientific Reports
Volume	volume13
Issue	issue1
Publisher	nature portfolio
Start Page	6974
ISSN	2045-2322
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2023
File Version	publisher
PubMed ID	37117398
DOI	10.1038/s41598-023-34125-8
Web of Science KeyUT	000985908500047
Related Url	isVersionOf https://doi.org/10.1038/s41598-023-34125-8

Development of light-induced disruptive liposomes (LiDL) as a photoswitchable carrier for intracellular substance delivery

FullText URL	fulltext20230619-04.pdf
Author	Tsuneishi, Taichi\| Kojima, Keiichi\| Kubota, Fumika\| Harashima, Hideyoshi\| Yamada, Yuma\| Sudo, Yuki\|
Published Date	2023
Publication Title	Chemical Communications
Volume	volume59
Issue	issue49
Publisher	Royal Society of Chemistry (RSC)
Start Page	7591
End Page	7594
ISSN	1359-7345
NCID	AA11071130
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Royal Society of Chemistry 2023
File Version	publisher
PubMed ID	37254694
DOI	10.1039/d3cc02056h
Web of Science KeyUT	000999015900001
Related Url	isVersionOf https://doi.org/10.1039/D3CC02056H

Correction: Convergent evolution of animal and microbial rhodopsins

FullText URL	fulltext.pdf
Author	Kojima, Keiichi\| Sudo, Yuki\|
Published Date	2023-03-06
Publication Title	RSC Advances
Volume	volume13
Issue	issue11
Publisher	Royal Society of Chemistry
Start Page	7222
End Page	7224
ISSN	2046-2069
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Author(s).
File Version	publisher
PubMed ID	36891494
DOI	10.1039/d3ra90016a
Web of Science KeyUT	000943987600001
Related Url	isVersionOf https://doi.org/10.1039/d3ra90016a

Convergent evolution of animal and microbial rhodopsins

FullText URL	fulltext.pdf
Author	Kojima, Keiichi\| Sudo, Yuki\|
Published Date	2023-02-13
Publication Title	RSC Advances
Volume	volume13
Issue	issue8
Publisher	ROYAL SOC CHEMISTRY
Start Page	5367
End Page	5381
ISSN	2046-2069
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Author(s).
File Version	publisher
PubMed ID	36793294
DOI	10.1039/d2ra07073a
Web of Science KeyUT	000929858500001
Related Url	isVersionOf https://doi.org/10.1039/d2ra07073a

Detection of Membrane Potential-Dependent Rhodopsin Fluorescence Using Low-Intensity Light Emitting Diode for Long-Term Imaging

FullText URL	fulltext.pdf
Author	Kawanishi, Shiho\| Kojima, Keiichi\| Shibukawa, Atsushi\| Sakamoto, Masayuki\| Sudo, Yuki\|
Published Date	2023-01-25
Publication Title	ACS Omega
Volume	volume8
Publisher	American Chemical Society
Start Page	4826
End Page	4834
ISSN	2470-1343
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2023 The Authors.
File Version	publisher
PubMed ID	36777568
DOI	10.1021/acsomega.2c06980
Web of Science KeyUT	000926216100001
Related Url	isVersionOf https://doi.org/10.1021/acsomega.2c06980

Exploring the Retinal Binding Cavity of Archaerhodopsin-3 by Replacing the Retinal Chromophore With a Dimethyl Phenylated Derivative

FullText URL	fulltext.pdf
Author	Tsuneishi, Taichi\| Takahashi, Masataka\| Tsujimura, Masaki\| Kojima, Keiichi\| Ishikita, Hiroshi\| Takeuchi, Yasuo\| Sudo, Yuki\|
Keywords	retinal rhodopsin proton pump derivative photoreceptor
Published Date	2021-12-20
Publication Title	Frontiers In Molecular Biosciences
Volume	volume8
Publisher	Frontiers Media SA
Start Page	794948
ISSN	2296-889X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2021 Tsuneishi, Takahashi, Tsujimura, Kojima, Ishikita, Takeuchi and Sudo.
File Version	publisher
PubMed ID	34988122
DOI	10.3389/fmolb.2021.794948
Web of Science KeyUT	000738864800001
Related Url	isVersionOf https://doi.org/10.3389/fmolb.2021.794948

Proton transfer pathway in anion channelrhodopsin-1

FullText URL	fulltext.pdf
Author	Tsujimura, Masaki\| Kojima, Keiichi\| Kawanishi, Shiho\| Sudo, Yuki\| Ishikita, Hiroshi\|
Published Date	2021-12-21
Publication Title	Elife
Volume	volume10
Publisher	eLIFE SCIENCES PUBL LTD
Start Page	e72264
ISSN	2050-084X
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© Tsujimura et al.
File Version	publisher
PubMed ID	34930528
DOI	10.7554/eLife.72264
Web of Science KeyUT	000733603500001
Related Url	isVersionOf https://doi.org/10.7554/eLife.72264

Microbial Rhodopsins as Multi-functional Photoreactive Membrane Proteins for Optogenetics

FullText URL	fulltext20211109-3.pdf
Author	Nakao, Shin\| Kojima, Keiichi\| Sudo, Yuki\|
Keywords	rhodopsin optogenetics retinal signal transduction
Published Date	2021-10-1
Publication Title	Biological and Pharmaceutical Bulletin
Volume	volume44
Issue	issue10
Publisher	Pharmaceutical Society of Japan
Start Page	1357
End Page	1363
ISSN	0918-6158
NCID	AA10885497
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© 2021 The Pharmaceutical Society of Japan
File Version	publisher
PubMed ID	34602542
DOI	10.1248/bpb.b21-00544
Web of Science KeyUT	000703500200002
Related Url	isVersionOf https://doi.org/10.1248/bpb.b21-00544

Functional expression of the eukaryotic proton pump rhodopsin OmR2 in Escherichia coli and its photochemical characterization

FullText URL	fulltext.pdf
Author	Kikuchi, Masuzu\| Kojima, Keiichi\| Nakao, Shin\| Yoshizawa, Susumu\| Kawanishi, Shiho\| Shibukawa, Atsushi\| Kikukawa, Takashi\| Sudo, Yuki\|
Published Date	2021-07-20
Publication Title	Scientific Reports
Volume	volume11
Issue	issue1
Publisher	Nature Portfolio
Start Page	14765
ISSN	2045-2322
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2021
File Version	publisher
PubMed ID	34285294
DOI	10.1038/s41598-021-94181-w
Web of Science KeyUT	000692201200025
Related Url	isVersionOf https://doi.org/10.1038/s41598-021-94181-w

Lokiarchaeota archaeon schizorhodopsin-2 (LaSzR2) is an inward proton pump displaying a characteristic feature of acid-induced spectral blue-shift

FullText URL	fulltext.pdf
Author	Kojima, Keiichi\| Yoshizawa, Susumu\| Hasegawa, Masumi\| Nakama, Masaki\| Kurihara, Marie\| Kikukawa, Takashi\| Sudo, Yuki\|
Published Date	2020-11-30
Publication Title	Scientific Reports
Volume	volume10
Issue	issue1
Publisher	Nature Research
Start Page	20857
ISSN	2045-2322
Content Type	Journal Article
language	English
OAI-PMH Set	岡山大学
Copyright Holders	© The Author(s) 2020
File Version	publisher
PubMed ID	33257762
DOI	10.1038/s41598-020-77936-9
Web of Science KeyUT	000609202800018
Related Url	isVersionOf https://doi.org/10.1038/s41598-020-77936-9