ID | 57462 |
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Sumi, Tomonari
Division of Superconducting and Functional Materials, Research Institute for Interdisciplinary Science, Okayama University
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Maruyama, Yutaka
Co-Design Team, FLAGSHIP 2020 Project, RIKEN Advanced Institute for Computational Science
Mitsutake, Ayori
Department of Physics, Keio University
Mochizuki , Kenji
Division of Superconducting and Functional Materials, Research Institute for Interdisciplinary Science, Okayama University
Koga, Kenichiro
Division of Superconducting and Functional Materials, Research Institute for Interdisciplinary Science, Okayama University
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Abstract | Recently, we proposed a reference‐modified density functional theory (RMDFT) to calculate solvation free energy (SFE), in which a hard‐sphere fluid was introduced as the reference system instead of an ideal molecular gas. Through the RMDFT, using an optimal diameter for the hard‐sphere reference system, the values of the SFE calculated at room temperature and normal pressure were in good agreement with those for more than 500 small organic molecules in water as determined by experiments. In this study, we present an application of the RMDFT for calculating the temperature and pressure dependences of the SFE for solute molecules in water. We demonstrate that the RMDFT has high predictive ability for the temperature and pressure dependences of the SFE for small solute molecules in water when the optimal reference hard‐sphere diameter determined for each thermodynamic condition is used. We also apply the RMDFT to investigate the temperature and pressure dependences of the thermodynamic stability of an artificial small protein, chignolin, and discuss the mechanism of high‐temperature and high‐pressure unfolding of the protein. © 2017 Wiley Periodicals, Inc.
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Keywords | 3D-RISM theory
chignolin
classical density functional theory
high-pressure unfolding
hydrophobic solute
protein
temperature and pressure dependences of solvation free energy
thermal denaturation
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Published Date | 2017-11-08
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Publication Title |
Journal of Computational Chemistry
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Volume | volume39
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Issue | issue4
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Publisher | Wiley
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Start Page | 202
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End Page | 217
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ISSN | 01928651
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NCID | AA00257341
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Content Type |
Journal Article
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language |
English
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OAI-PMH Set |
岡山大学
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File Version | author
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Related Url | isVersionOf https://doi.org/10.1002/jcc.25101
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Funder Name |
Japan Society for the Promotion of Science
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