| ID | 57524 |
| FullText URL | |
| Author |
Kondo, Hideki
Institute of Plant Science and Resources (IPSR), Okayama University
Kaken ID
publons
researchmap
Chiba, Sotaro
Institute of Plant Science and Resources (IPSR)Okayama University
Suzuki, Nobuhiro
Institute of Plant Science and Resources (IPSR), Okayama University
ORCID
Kaken ID
publons
researchmap
|
| Abstract | Endogenous non-retroviral RNA like sequences (NRVSs) have been discovered in the genome of a wide range of eukaryotes. These are considered as fossil RNA viral elements integrated into host genomes by as-yet-known mechanisms, and in many cases, those fossils are estimated to be millions-of-years-old. It is likely that the number of NRVS records will increase rapidly due to the growing availability of whole-genome sequences for many kinds of eukaryotes. Discovery of the novel NRVSs and understanding of their phylogenetic relationship with modern viral relatives provide important information on deep evolutionary history of RNA virus-host interactions. In this chapter, therefore, the common strategies for the identification and characterization of endogenous NRVSs from plants, insects, and fungi are described.
|
| Keywords | Pareovirology
Molecular fossil record
Non-retrovirus-like sequence
Database search
Whole-genome shotgun
Genomic PCR
Southern blotting
Phylogenetic analysis
Maximum-likelihood
|
| Note | Methods in Molecular Biology v.1236
|
| Published Date | 2014-09-16
|
| Publication Title |
Plant Virology Protocols
|
| Publisher | Humana Press
|
| Start Page | 73
|
| End Page | 88
|
| NCID | BB17407557
|
| Content Type |
Book
|
| File Version | author
|
| PubMed ID | |
| DOI | |
| Related Url | isVersionOf https://doi.org/10.1007/978-1-4939-1743-3_7
|
| Citation | Kondo H., Chiba S., Suzuki N. (2015) Detection and Analysis of Non-retroviral RNA Virus-Like Elements in Plant, Fungal, and Insect Genomes. In: Uyeda I., Masuta C. (eds) Plant Virology Protocols. Methods in Molecular Biology (Methods and Protocols), vol 1236. Humana Press, New York, NY
|
| Funder Name |
Ministry of Education, Culture, Sports, Science and Technology
|
| 助成番号 | 40263628
25252011
|
