| 著者 | Okada, Koki| Morimoto, Yu| Shiraishi, Yukine| Tamura, Takashi| Mayama, Shigeki| Kadono, Takashi| Adachi, Masao| Ifuku, Kentaro| Nemoto, Michiko| |
|---|---|
| キーワード | Diatom Genetic transformation Nitzschia Multi-pulse electroporation |
| 備考 | This version of the article has been accepted for publication, after peer review (when applicable) and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: http://dx.doi.org/10.1007/s10126-023-10273-w| This fulltext file will be available in Dec. 2024.| |
| 発行日 | 2023-12-10 |
| 出版物タイトル | Marine Biotechnology |
| 巻 | 25巻 |
| 号 | 6号 |
| 出版者 | Springer Science and Business Media LLC |
| 開始ページ | 1208 |
| 終了ページ | 1219 |
| ISSN | 1436-2228 |
| NCID | AA11357643 |
| 資料タイプ | 学術雑誌論文 |
| 言語 | 英語 |
| OAI-PMH Set | 岡山大学 |
| 著作権者 | © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023 |
| 論文のバージョン | author |
| PubMed ID | 38071657 |
| DOI | 10.1007/s10126-023-10273-w |
| Web of Science KeyUT | 001120097200001 |
| 関連URL | isVersionOf https://doi.org/10.1007/s10126-023-10273-w |
| タイトル（別表記） | A comparative gene analysis reveals a diatom-specific SET domain protein family |
|---|---|
| フルテキストURL | srfa_110_001_006.pdf |
| 著者 | 根本 理子| |
| 抄録 | The silica cell walls of diatoms, which exhibit species-spe-cific micro- and nano- patterned structures are promising candidates for applications in nanotechnology. Previous studies revealed a number of silica cell wall-associated proteins involved in silica formation. However, molecular biological analyses toward understanding of diatom cell wall formation have been mostly limited to model diatom species and general silica formation process in diatoms is still incompletely understood. In this study, to gain a compre-hensive insight into diatom silica biomineralization, tran-scriptome data of three diatom species, Nitzschia palea, Achnanthes kuwaitensis and Pseudoleyanella lunata, were newly developed. The reads obtained from RNA sequencing were assembled into 31,946, 60,767 and 38,314 unique transcripts for N. palea, A. kuwaitensis and P. lunata, respectively. In order to identify the diatom-specific genes, three transcriptome data sets developed in this study and the protein-coding gene sets of five genome-sequenced diatoms were compared. The proteins shared only by eight diatom species that are predicted to possess an endoplasmic reticulum (ER)-targeting signal peptide were selected for further analyses. These include proteins showing homology to silicanin-1, a recently reported diatom-specific protein involved in silica formation, as well as a number of SET domain proteins. The SET domain proteins might be novel diatom-specific family of methyltransferases that may reg-ulate the function of silica formation related proteins or long chain polyamines. The genes encoding the diatom-specific SET domain proteins identified in this study, which were shown to respond to silicon were suggested to be implicated in silica biomineralization. |
| キーワード | Biomineralization Diatom Silica Protein |
| 出版物タイトル | 岡山大学農学部学術報告 |
| 発行日 | 2021-02-01 |
| 巻 | 110巻 |
| 開始ページ | 1 |
| 終了ページ | 6 |
| ISSN | 2186-7755 |
| 言語 | 日本語 |
| 論文のバージョン | publisher |
| NAID | 120006955817 |
| フルテキストURL | fulltext.pdf |
|---|---|
| 著者 | Nemoto, Michiko| Iwaki, Sayako| Moriya, Hisao| Monden, Yuki| Tamura, Takashi| Inagaki, Kenji| Mayama, Shigeki| Obuse, Kiori| |
| キーワード | Biomineralization Diatom Silica Transcriptome Proteome |
| 備考 | This is a post-peer-review, pre-copyedit version of an article published in Marine Biotechnology. The final authenticated version is available online at: http://dx.doi.org/10.1007/s10126-020-09976-1.| |
| 発行日 | 2020-06-03 |
| 出版物タイトル | Marine Biotechnology |
| 出版者 | Springer |
| ISSN | 1436-2228 |
| NCID | AA11357643 |
| 資料タイプ | 学術雑誌論文 |
| 言語 | フランス語 |
| OAI-PMH Set | 岡山大学 |
| 論文のバージョン | author |
| PubMed ID | 32488507 |
| DOI | 10.1007/s10126-020-09976-1 |
| Web of Science KeyUT | 000537432000001 |
| 関連URL | isVersionOf https://doi.org/10.1007/s10126-020-09976-1 |
| 著者 | Tamura, Takashi| Tsunekawa, Naoki| Nemoto, Michiko| Inagaki, Kenji| Hirano, Toshiyuki| Sato, Fumitoshi| |
|---|---|
| 発行日 | 2016-01-28 |
| 出版物タイトル | Scientific reports |
| 巻 | 6巻 |
| 資料タイプ | 学術雑誌論文 |
| 著者 | Oshima, Kenshiro| Hattori, Masahira| Shimizu, Hitomi| Fukuda, Koji| Nemoto, Michiko| Inagaki, Kenji| Tamura, Takashi| |
|---|---|
| 発行日 | 2015-07-09 |
| 出版物タイトル | Genome Announcements |
| 巻 | 3巻 |
| 号 | 4号 |
| 資料タイプ | 学術雑誌論文 |