ID | 64144 |
フルテキストURL | |
著者 |
Yamaguchi, Kizashi
Center for Quantum Information and Quantum Biology, Osaka University
Shoji, Mitsuo
Center of Computational Sciences, Tsukuba University
Isobe, Hiroshi
Research Institute for Interdisciplinary Science, and Graduate School of Natural Science and Technology, Okayama University
Kawakami, Takashi
RIKEN Center for Computational Science
Miyagawa, Koichi
Center of Computational Sciences, Tsukuba University
Suga, Michihiro
Research Institute for Interdisciplinary Science, and Graduate School of Natural Science and Technology, Okayama University
ORCID
Kaken ID
researchmap
Akita, Fusamichi
Research Institute for Interdisciplinary Science, and Graduate School of Natural Science and Technology, Okayama University
ORCID
Kaken ID
publons
researchmap
Shen, Jian-Ren
Research Institute for Interdisciplinary Science, and Graduate School of Natural Science and Technology, Okayama University
ORCID
Kaken ID
publons
researchmap
|
抄録 | The aim of this review is to elucidate geometric structures of the catalytic CaMn4Ox (x = 5, 6) cluster in the Kok cycle for water oxidation in the oxygen evolving complex (OEC) of photosystem II (PSII) based on the high-resolution (HR) X-ray diffraction (XRD) and serial femtosecond crystallography (SFX) experiments using the X-ray free-electron laser (XFEL). Quantum mechanics (QM) and QM/molecular mechanics (MM) computations are performed to elucidate the electronic and spin structures of the CaMn4Ox (x = 5, 6) cluster in five states S-i (i = 0 similar to 4) on the basis of the X-ray spectroscopy, electron paramagnetic resonance (EPR) and related experiments. Interplay between the experiments and theoretical computations has been effective to elucidate the coordination structures of the CaMn4Ox (x = 5, 6) cluster ligated by amino acid residues of the protein matrix of PSII, valence states of the four Mn ions and total spin states by their exchange-couplings, and proton-shifted isomers of the CaMn4Ox (x = 5, 6) cluster. The HR XRD and SFX XFEL experiments have also elucidated the biomolecular systems structure of OEC of PSII and the hydrogen bonding networks consisting of water molecules, chloride anions, etc., for water inlet and proton release pathways in PSII. Large-scale QM/MM computations have been performed for elucidation of the hydrogen bonding distances and angles by adding invisible hydrogen atoms to the HR XRD structure. Full geometry optimizations by the QM and QM/MM methods have been effective for elucidation of the molecular systems structure around the CaMn4Ox (x = 5, 6) cluster in OEC. DLPNO-CCSD(T-0) method has been applied to elucidate relative energies of possible intermediates in each state of the Kok cycle for water oxidation. Implications of these results are discussed in relation to the blueprint for developments of artificial catalysts for water oxidation.
|
キーワード | Water oxidation
Oxygen evolution
Photosystem II
HR XRD
SFX XFEL
QM/MM calculation
DLPNO CCSD(T-0) computations, Oxyl radical character
|
備考 | (C) 2022 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 License. http://creativecommons.org/licenses/by-nc-nd/4.0/.
This is the accepted manuscript version. The formal published version is available at https://doi.org/10.1016/j.ccr.2022.214742
This full-text file will be available in Aug. 2024.
|
発行日 | 2022-11
|
出版物タイトル |
Coordination Chemistry Reviews
|
巻 | 471巻
|
出版者 | Elsevier BV
|
開始ページ | 214742
|
ISSN | 0010-8545
|
NCID | AA00619249
|
資料タイプ |
学術雑誌論文
|
言語 |
英語
|
OAI-PMH Set |
岡山大学
|
著作権者 | © 2022 Elsevier B.V.
|
論文のバージョン | author
|
DOI | |
Web of Science KeyUT | |
関連URL | isVersionOf https://doi.org/10.1016/j.ccr.2022.214742
|
Citation | http://creativecommons.org/licenses/by-nc-nd/4.0/
|
助成機関名 |
Ministry of Education, Culture, Sports, Science and Technology
|
助成番号 | JP18H05154
JP20K05528
JP18H05167
JP17H06434
|