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ID 65242
フルテキストURL
著者
Sato, Masanao Division of Applied Bioscience, Graduate School of Agriculture, Hokkaido University
Seki, Masahide Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo
Suzuki, Yutaka Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo
Ueki, Shoko Institute of Plant Science and Resources, Okayama University
抄録
Heterosigma akashiwo is a eukaryotic, cosmopolitan, and uni-cellular alga (class: Raphidophyceae), and produces fish -killing blooms. There is a substantial scientific and practical interest in its ecophysiological characteristics that determine bloom dynamics and its adaptation to broad climate zones. A well-annotated genomic/genetic sequence information en-ables researchers to characterize organisms using modern molecular technology. In the present study, we conducted H. akashiwo RNA sequencing, a de novo transcriptome assem-bly of 84,693,530 high-quality deduplicated short-read se-quences.
Obtained RNA reads were assembled by Trinity assembler and 144,777 contigs were identified with N 50 values of 1085. Total 60,877 open reading frames with the length of 150 bp or greater were predicted. For further analy-ses, top Gene Ontology terms, pfam hits, and blast hits were annotated for all the predicted genes. The raw data were deposited in the NCBI SRA database (BioProject PR - JDB6241 and PRJDB15108), and the assemblies are available in NCBI TSA database (ICRV01). The annotation information can be obtained in Dryad and can be accessed via doi: 10.5061/dryad.m0cfxpp56.
キーワード
Harmful alga
Nuclear gene
Gene prediction
Gene ontology
Stramenopile
Heterokont
発行日
2023-06
出版物タイトル
Data in Brief
48巻
出版者
Elsevier
開始ページ
109071
ISSN
2352-3409
資料タイプ
学術雑誌論文
言語
英語
OAI-PMH Set
岡山大学
著作権者
© 2023 The Author(s).
論文のバージョン
publisher
PubMed ID
DOI
Web of Science KeyUT
関連URL
isVersionOf https://doi.org/10.1016/j.dib.2023.109071
ライセンス
http://creativecommons.org/licenses/by/4.0/
助成機関名
Japan Society for the Promotion of Science
助成番号
16H06449
221S0002