ID | 60756 |
FullText URL | |
Author |
Hirata, Chiharu
Fukuoka Agriculture and Forestry Research Center
Waki, Takamitsu
Tochigi Prefectural Agricultural Experiment Station
Shimomura, Katsumi
Fukuoka Agriculture and Forestry Research Center
Wada, Takuya
Fukuoka Agriculture and Forestry Research Center
Tanaka, Seiya
Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University
Ikegami, Hidetoshi
Fukuoka Agriculture and Forestry Research Center
Uchimura, Yousuke
Fukuoka Agriculture and Forestry Research Center
Hirashima, Keita
Fukuoka Agriculture and Forestry Research Center
Nakazawa, Yoshiko
Tochigi Prefectural Agricultural Experiment Station
Okada, Kaori
Tochigi Prefectural Agricultural Experiment Station
Namai, Kiyoshi
Tochigi Prefectural Agricultural Experiment Station
Tahara, Makoto
Graduate School of Environmental and Life Science, Okayama University
Kaken ID
publons
researchmap
Monden, Yuki
Graduate School of Environmental and Life Science, Okayama University
Kaken ID
publons
researchmap
|
Abstract | In this study, DNA markers were developed for discrimination of strawberry (Fragaria × ananassa L.) cultivars based on retrotransposon insertion polymorphisms. We performed a comprehensive genomic search to identify retrotransposon insertion sites and subsequently selected one retrotransposon family, designated CL3, which provided reliable discrimination among strawberry cultivars. Through analyses of 75 strawberry cultivars, we developed eight cultivar-specific markers based on CL3 retrotransposon insertion sites. Used in combination with 10 additional polymorphic markers, we differentiated 35 strawberry cultivars commonly cultivated in Japan. In addition, we demonstrated that the retrotransposon-based markers were effective for PCR detection of DNA extracted from processed food materials, whereas a SSR marker was ineffective. These results indicated that the retrotransposon-based markers are useful for cultivar discrimination for processed food products, such as jams, in which DNA may be fragmented or degraded.
|
Keywords | Fragaria × ananassa
high-throughput sequencing
PCR product
processed foods
retrotransposon insertion polymorphisms
|
Published Date | 2020
|
Publication Title |
Breeding Science
|
Volume | volume70
|
Issue | issue2
|
Publisher | Japanese Society of Breeding
|
Start Page | 231
|
End Page | 240
|
ISSN | 1344-7610
|
NCID | AA11353132
|
Content Type |
Journal Article
|
language |
English
|
OAI-PMH Set |
岡山大学
|
Copyright Holders | © Japanese Society of Breeding
|
File Version | publisher
|
PubMed ID | |
NAID | |
DOI | |
Web of Science KeyUT | |
Related Url | isVersionOf https://doi.org/10.1270/jsbbs.19116
|