| FullText URL | fulltext.pdf |
|---|---|
| Author | Masuda, Kanae| Kuwada, Eriko| Suzuki, Maria| Suzuki, Tetsuya| Niikawa, Takeshi| Uchida, Seiichi| Akagi, Takashi| |
| Keywords | Artificial intelligence Backpropagation Convolutional neural network Image diagnosis Physiological disorder |
| Published Date | 2023-05-24 |
| Publication Title | Plant And Cell Physiology |
| Volume | volume64 |
| Issue | issue11 |
| Publisher | Oxford University Press (OUP) |
| Start Page | 1323 |
| End Page | 1330 |
| ISSN | 0032-0781 |
| NCID | AA0077511X |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © The Author(s) 2023. |
| File Version | publisher |
| PubMed ID | 37225398 |
| DOI | 10.1093/pcp/pcad050 |
| Web of Science KeyUT | 001003754000001 |
| Related Url | isVersionOf https://doi.org/10.1093/pcp/pcad050 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Horiuchi, Ayano| Masuda, Kanae| Shirasawa, Kenta| Onoue, Noriyuki| Matsuzaki, Ryusuke| Tao, Ryutaro| Kubo, Yasutaka| Ushijima, Koichiro| Akagi, Takashi| |
| Keywords | fruit shape astringency polyploid population structure GWAS |
| Published Date | 2023-06-16 |
| Publication Title | DNA Research |
| Volume | volume30 |
| Issue | issue5 |
| Publisher | Oxford University Press |
| Start Page | dsad015 |
| ISSN | 1340-2838 |
| NCID | AA11095219 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © The Author(s) 2023. |
| File Version | publisher |
| PubMed ID | 37326063 |
| DOI | 10.1093/dnares/dsad015 |
| Web of Science KeyUT | 001059198000001 |
| Related Url | isVersionOf https://doi.org/10.1093/dnares/dsad015 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Horiuchi, Ayano| Masuda, Kanae| Shirasawa, Kenta| Onoue, Noriyuki| Fujita, Naoko| Ushijima, Koichiro| Akagi, Takashi| |
| Keywords | sex chromosome genome assembly monoecy transposable elements |
| Published Date | 2023-07-07 |
| Publication Title | Molecular Biology and Evolution |
| Volume | volume40 |
| Issue | issue7 |
| Publisher | Oxford University Press |
| Start Page | msad151 |
| ISSN | 0737-4038 |
| NCID | AA10643104 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © The Author(s) 2023. |
| File Version | publisher |
| PubMed ID | 37414545 |
| DOI | 10.1093/molbev/msad151 |
| Web of Science KeyUT | 001029882200001 |
| Related Url | isVersionOf https://doi.org/10.1093/molbev/msad151 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Akagi, Takashi| Jung, Katharina| Masuda, Kanae| Shimizu, Kentaro K.| |
| Keywords | Polyploidy Domestication Crops Self-compatibility |
| Published Date | 2022-10 |
| Publication Title | Current Opinion in Plant Biology |
| Volume | volume69 |
| Publisher | Elsevier |
| Start Page | 102255 |
| ISSN | 13695266 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © 2022 The Author(s). |
| File Version | publisher |
| PubMed ID | 35870416 |
| DOI | 10.1016/j.pbi.2022.102255 |
| Web of Science KeyUT | 000853245700003 |
| Related Url | isVersionOf https://doi.org/10.1016/j.pbi.2022.102255 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Tominaga, Yuki| Sakurai, Yusuke| Miyata, Junya| Harada, Shuichi| Akagi, Takashi| Oita, Masataka| |
| Keywords | commissioning lateral penumbra multi-leaf collimator pencil beam scanning proton therapy |
| Published Date | 2022-11-24 |
| Publication Title | Journal Of Applied Clinical Medical Physics |
| Volume | volume23 |
| Publisher | Wiley |
| Start Page | e13817 |
| ISSN | 1526-9914 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © 2022 The Authors. |
| File Version | publisher |
| PubMed ID | 36420959 |
| DOI | 10.1002/acm2.13817 |
| Web of Science KeyUT | 000889306500001 |
| Related Url | isVersionOf https://doi.org/10.1002/acm2.13817 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Mitalo, Oscar W.| Asiche, William O.| Kang, Seung W.| Ezura, Hiroshi| Akagi, Takashi| Kubo, Yasutaka| Ushijima, Koichiro| |
| Keywords | chlorophyll citrus degreening ethylene RNA-Seq on-tree storage |
| Published Date | 2022-07-13 |
| Publication Title | Frontiers In Plant Science |
| Volume | volume13 |
| Publisher | Frontiers Media SA |
| Start Page | 918226 |
| ISSN | 1664-462X |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © 2022 Mitalo, Asiche, Kang, Ezura, Akagi, Kubo and Ushijima. |
| File Version | publisher |
| PubMed ID | 35909736 |
| DOI | 10.3389/fpls.2022.918226 |
| Web of Science KeyUT | 000832990000001 |
| Related Url | isVersionOf https://doi.org/10.3389/fpls.2022.918226 |
| FullText URL | 91_UTD-323.pdf |
|---|---|
| Author | Suzuki, Maria| Masuda, Kanae| Asakuma, Hideaki| Takeshita, Kouki| Baba, Kohei| Kubo, Yasutaka| Ushijima, Koichiro| Uchida, Seiichi| Akagi, Takashi| |
| Published Date | 2022 |
| Publication Title | The Horticulture Journal |
| Volume | volume91 |
| Issue | issue3 |
| Publisher | Japanese Society for Horticultural Science |
| ISSN | 2189-0102 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © 2022 The Japanese Society for Horticultural Science (JSHS) |
| File Version | author |
| DOI | 10.2503/hortj.utd-323 |
| Web of Science KeyUT | 000828874700001 |
| Related Url | isVersionOf https://doi.org/10.2503/hortj.utd-323 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Masuda, Kanae| Fujita, Naoko| Yang, Ho-Wen| Ushijima, Koichiro| Kubo, Yasutaka| Tao, Ryutaro| Akagi, Takashi| |
| Keywords | monoecious sex expression polyploidy Oriental persimmon co-expression network |
| Published Date | 2020-12-22 |
| Publication Title | Frontiers in Plant Science |
| Volume | volume11 |
| Publisher | Frontiers Media |
| Start Page | 567249 |
| ISSN | 1664-462X |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © 2020 Masuda, Fujita, Yang, Ushijima, Kubo, Tao and Akagi. |
| File Version | publisher |
| PubMed ID | 33414795 |
| DOI | 10.3389/fpls.2020.567249 |
| Web of Science KeyUT | 000604603500001 |
| Related Url | isVersionOf https://doi.org/10.3389/fpls.2020.567249 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Masuda, Kanae| Yamamoto, Eiji| Shirasawa, Kenta| Onoue, Noriyuki| Kono, Atsushi| Ushijima, Koichiro| Kubo, Yasutaka| Tao, Ryutaro| Henry, Isabelle M.| Akagi, Takashi| |
| Keywords | flexible sexuality monoecy polyploid GWAS |
| Published Date | 2020-06-17 |
| Publication Title | DNA Research |
| Volume | volume27 |
| Issue | issue3 |
| Publisher | OXFORD UNIV PRESS |
| Start Page | dsaa012 |
| ISSN | 1340-2838 |
| NCID | AA11095219 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © The Author(s) 2020. |
| File Version | publisher |
| PubMed ID | 32761076 |
| DOI | 10.1093/dnares/dsaa012 |
| Web of Science KeyUT | 000577169400006 |
| Related Url | isVersionOf https://doi.org/10.1093/dnares/dsaa012 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Mitalo, Oscar W.| Otsuki, Takumi| Okada, Rui| Obitsu, Saeka| Masuda, Kanae| Hojo, Yuko| Matsuura, Takakazu| Mori, Izumi C.| Abe, Daigo| Asiche, William O.| Akagi, Takashi| Kubo, Yasutaka| Ushijima, Koichiro| |
| Keywords | 1-methylcyclopropene carotenoids chlorophyll Citrus limon ethylene low temperature peel degreening phytohormones transcriptome |
| Published Date | 2020-05-06 |
| Publication Title | Journal of Experimental Botany |
| Volume | volume71 |
| Issue | issue16 |
| Publisher | Oxford University Press |
| Start Page | 4778 |
| End Page | 4796 |
| ISSN | 0022-0957 |
| NCID | AA00697526 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © The Author(s) 2020. |
| File Version | publisher |
| PubMed ID | 32374848 |
| DOI | 10.1093/jxb/eraa206 |
| Web of Science KeyUT | 000573250000015 |
| Related Url | isVersionOf https://doi.org/10.1093/jxb/eraa206 |
| FullText URL | fulltext.pdf |
|---|---|
| Author | Akagi, Takashi| Shirasawa, Kenta| Nagasaki, Hideki| Hirakawa, Hideki| Tao, Ryutaro| Comai, Luca| Henry, Isabelle M.| |
| Published Date | 2020-02-18 |
| Publication Title | PLoS Genetics |
| Volume | volume16 |
| Issue | issue2 |
| Publisher | Public Library of Science |
| Start Page | e1008566 |
| ISSN | 1553-7404 |
| Content Type | Journal Article |
| language | English |
| OAI-PMH Set | 岡山大学 |
| Copyright Holders | © 2020 Akagi et al. |
| File Version | publisher |
| PubMed ID | 32069274 |
| DOI | 10.1371/journal.pgen.1008566 |
| Web of Science KeyUT | 000519137100008 |
| Related Url | isVersionOf https://doi.org/10.1371/journal.pgen.1008566 |
| Title Alternative | Sexuality in plants, unveiled from genome evolution |
|---|---|
| FullText URL | srfa_109_037_040.pdf |
| Author | Akagi, Takashi| |
| Abstract | Sexual polymorphism, a main strategy to maintain genetic diversity within a species, has long been a major focus in biology. Notwithstanding, in plants, evolution of sexual systems and mechanisms underlying these transitions have been little unveiled. We have elucidated the molecular mechanism of sex determination in persimmons (Diospyros spp.), where the Y-encoded smRNA gene OGI can repress the female-determining gene MeGI, and also in kiwifruits (Actinidia spp.), where the Y-encoded two sex determinants, Shy Girl and Friendly Boy, control gynoecium and androecium development, respectively. Although the molecular functions of these determinants are distinct, they have common evolutionary scenarios involving transitions of sexual systems. In persimmon, a recent genome triplication (hexaploidization) in cultivated persimmon (D. kaki) derived “flexible” sexuality via establishing epigenetic layers on the two sex determinants. On the other hand, an ancient Diospyros-specific paleo-genome duplication (paleo-tetraploidization) enabled neofunctionalization in the proto-MeGI, via positive selection, to establish a new function as a sex determinant. In kiwifruit, one of the two sex determinants, Shy Girl, was derived from neofunctionalization via Actinidia-specific duplication event. These findings exemplify how plant-specific numerous duplication events can drive flexible genetic material whose variation can be selected for development of new sexual systems. |
| Keywords | Sex determination Sex chromosome Polyploidization Genome evolution Tree crops |
| Publication Title | Scientific Reports of the Faculty of Agriculture, Okayama University |
| Published Date | 2020-02-01 |
| Volume | volume109 |
| Start Page | 37 |
| End Page | 40 |
| ISSN | 2186-7755 |
| language | Japanese |
| File Version | publisher |
