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ID 57461
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Sumi, Tomonari Department of Chemistry, Faculty of Science, Okayama University, ORCID Kaken ID publons researchmap
Mitsutake, Ayori Department of Physics, Keio University,
Maruyama, Yutaka Department of Physics, Keio University,
Abstract
The three-dimensional reference interaction site model (3D-RISM) theory, which is one of the most applicable integral equation theories for molecular liquids, overestimates the absolute values of solvation-free-energy (SFE) for large solute molecules in water. To improve the free-energy density functional for the SFE of solute molecules, we propose a reference-modified density functional theory (RMDFT) that is a general theoretical approach to construct the free-energy density functional systematically. In the RMDFT formulation, hard-sphere (HS) fluids are introduced as the reference system instead of an ideal polyatomic molecular gas, which has been regarded as the appropriate reference system of the interaction-site-model density functional theory for polyatomic molecular fluids. We show that using RMDFT with a reference HS system can significantly improve the absolute values of the SFE for a set of neutral amino acid side-chain analogues as well as for 504 small organic molecules.
Keywords
salvation-free-energy
classical density functional theory
3D-RISM theory
water
amino acid side-chain
chignolin
Published Date
2015-05-31
Publication Title
Journal of Computational Chemistry
Volume
volume36
Issue
issue18
Start Page
1359
End Page
1369
ISSN
01928651
NCID
AA00257341
Content Type
Journal Article
language
English
OAI-PMH Set
岡山大学
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author
PubMed ID
DOI
Web of Science KeyUT
Related Url
isVersionOf https://doi.org/10.1002/jcc.23942
Funder Name
Ministry of Education, Culture, Sports, Science and Technology