start-ver=1.4
cd-journal=joma
no-vol=
cd-vols=
no-issue=
article-no=
start-page=73
end-page=88
dt-received=
dt-revised=
dt-accepted=
dt-pub-year=2014
dt-pub=20140916
dt-online=
en-article=
kn-article=
en-subject=
kn-subject=
en-title=
kn-title=Detection and analysis of non-retroviral RNA virus-like elements in plant, fungal, and insect genomes.
en-subtitle=
kn-subtitle=
en-abstract=
kn-abstract= Endogenous non-retroviral RNA like sequences (NRVSs) have been discovered in the genome of a wide range of eukaryotes. These are considered as fossil RNA viral elements integrated into host genomes by as-yet-known mechanisms, and in many cases, those fossils are estimated to be millions-of-years-old. It is likely that the number of NRVS records will increase rapidly due to the growing availability of whole-genome sequences for many kinds of eukaryotes. Discovery of the novel NRVSs and understanding of their phylogenetic relationship with modern viral relatives provide important information on deep evolutionary history of RNA virus-host interactions. In this chapter, therefore, the common strategies for the identification and characterization of endogenous NRVSs from plants, insects, and fungi are described.
en-copyright=
kn-copyright=

en-aut-name=KondoHideki
en-aut-sei=Kondo
en-aut-mei=Hideki
kn-aut-name=
kn-aut-sei=
kn-aut-mei=
aut-affil-num=1
ORCID=

en-aut-name=ChibaSotaro
en-aut-sei=Chiba
en-aut-mei=Sotaro
kn-aut-name=
kn-aut-sei=
kn-aut-mei=
aut-affil-num=2
ORCID=

en-aut-name=SuzukiNobuhiro
en-aut-sei=Suzuki
en-aut-mei=Nobuhiro
kn-aut-name=
kn-aut-sei=
kn-aut-mei=
aut-affil-num=3
ORCID=

affil-num=1
en-affil=Institute of Plant Science and Resources (IPSR), Okayama University
kn-affil=

affil-num=2
en-affil=Institute of Plant Science and Resources (IPSR)Okayama University
kn-affil=

affil-num=3
en-affil=Institute of Plant Science and Resources (IPSR), Okayama University
kn-affil=
en-keyword=Pareovirology
kn-keyword=Pareovirology
en-keyword=Molecular fossil record
kn-keyword=Molecular fossil record
en-keyword=Non-retrovirus-like sequence
kn-keyword=Non-retrovirus-like sequence
en-keyword=Database search
kn-keyword=Database search
en-keyword=Whole-genome shotgun
kn-keyword=Whole-genome shotgun
en-keyword=Genomic PCR
kn-keyword=Genomic PCR
en-keyword=Southern blotting
kn-keyword=Southern blotting
en-keyword=Phylogenetic analysis
kn-keyword=Phylogenetic analysis
en-keyword=Maximum-likelihood
kn-keyword=Maximum-likelihood
END